Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq546 113 4e-20 >seq546 Length=49788 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTT 27096 ||||| ||| | |||||| ||||| ||||| ||||| || | || | |||| |||||| Sbjct 30209 TACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATC-CGCAAGCGTGCGTCCGTCTT 30151 Query 27097 CGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGG 27156 | || ||||||||||| |||| ||||| || || || || || | || ||||| || Sbjct 30150 CCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCCT 30091 Query 27157 CGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATT 27216 |||||| |||| | || | ||| |||| | ||| ||||| | || |||| || Sbjct 30090 GGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTTT 30031 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || || ||||| |||||||| Sbjct 30030 TCCCAGTCAGCGTCTTAACAAAAATTTGCAT 30000 Score = 105 bits (116), Expect = 6e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 ||||| || ||||| || ||||| || || ||||| || | || | | || ||||||| Sbjct 29980 ACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCAAGCGTTCGTCCGTCTTC 29922 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || |||||||||||| | || ||||| || ||||| || || | || || || || Sbjct 29921 TAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 29862 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | |||||| | | || ||||| | |||||| | ||| Sbjct 29861 GATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTT 29802 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| || || ||||| |||||||| Sbjct 29801 CCCAGTCAGCGTCTTAACAAAAATTTGCAT 29772 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 || || || ||||| || ||||| || || ||||| || | || | | || ||||||| Sbjct 29752 ACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCAAGAGTACGTCCGTCTTC 29694 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || ||| | || ||||| || ||||| || || | || || || || Sbjct 29693 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTG 29634 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| |||| | | || | |||||||| | || ||||| | |||||||| ||| Sbjct 29633 GATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTTTT 29574 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || |||| ||||||||||| || ||||| Sbjct 29573 TCCAGTCAAGGTTTTCACAAATATCTGCAT 29544 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTC 27097 || || || ||||| || ||||| ||||| ||||| || | || | | || ||||||| Sbjct 29524 ACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATC-CGCAAGCGTTCGTCCGTCTTC 29466 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 || ||||| || ||| | || ||||| || ||||| || || | || ||||| || Sbjct 29465 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTG 29406 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| || | | || | ||||||| | |||||||| | ||| || | || Sbjct 29405 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTT 29346 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTA 27263 || || || ||||||||||| || ||||| | || | ||||||| Sbjct 29345 TCCAGTAAGCGTTTTCACAAAAATCTGCAT-GGTGATTCAAATTTA 29301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424876743439896