Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq546 168 8e-37 seq8657 138 1e-27 seq3466 102 9e-17 seq151 91.5 2e-13 >seq546 Length=49788 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || |||||||| | || || || || Sbjct 29999 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 30058 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| || | ||| ||||||| || || |||||||| || ||||||||||||||||| Sbjct 30059 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 30118 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| |||||||||||||| ||||| ||||| || || | || || || || || || || Sbjct 30119 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 30178 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || |||||||| || | |||||||| ||||| Sbjct 30179 CATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 30226 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| |||||||| || || || || || ||| | || || |||||| Sbjct 29771 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 29830 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || || ||||||||||| ||||||||||| || || Sbjct 29831 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29890 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || || ||||| ||||| || || | || || || || || || || Sbjct 29891 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 29950 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || | || | |||||||| |||||| Sbjct 29951 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGA 29999 Score = 138 bits (152), Expect = 1e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || | || || || ||||| ||| | || || |||||| Sbjct 29543 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 29602 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| || ||||||| || || ||||||||||| ||||||||||| || || Sbjct 29603 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29662 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| ||||| || || ||||| || ||||| || || | ||||| || || || || || Sbjct 29663 GCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAA 29722 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || ||||| || | || |||| | |||||||| |||||| Sbjct 29723 CATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGA 29771 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || |||||||| || ||||| || ||| | || |||||||| Sbjct 29316 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 29375 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||||| || ||||| ||||| || ||||||||||| || ||| Sbjct 29376 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 29435 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| || ||||| || || | || || || || || || || Sbjct 29436 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 29495 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || ||||| || | || |||| | || || || |||||| Sbjct 29496 ATTCAGAAAGAATCAACGTTGCACTTAGTGCTTCGCCTCCGTGGTGGA 29543 >seq8657 Length=30266 Score = 138 bits (152), Expect = 1e-27 Identities = 144/189 (76%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 26157 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 26098 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||||||| || ||||| |||||||| ||||||||||| ||||| Sbjct 26097 CGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 26038 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| | ||||| || || || ||| | ||||| | || || || || || || || Sbjct 26037 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 25978 Query 27585 TGTCCAAAA 27593 ||||||| Sbjct 25977 CATCCAAAA 25969 >seq3466 Length=44099 Score = 102 bits (112), Expect = 9e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27433 GGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAA 27492 || || || ||||| || || || || |||| || | |||| ||| | ||| || Sbjct 35991 GGAAAAACAATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAG 36050 Query 27493 ATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAA 27552 ||||| |||||||| ||||||||||| ||||| || |||||||||||||| || || ||| Sbjct 36051 ATTCAAGACAAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAA 36110 Query 27553 CTCGAGGATGATCGTACCCTA 27573 || || || | |||||| ||| Sbjct 36111 CTTGAAGACGGTCGTACTCTA 36131 >seq151 Length=34927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 80014 TGAATTGGCTTG-----GCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGC 80068 |||||||| ||| || ||| || || || ||||||||||| || |||||||| | Sbjct 29146 TGAATTGGATTGCATCTGCTCTTGGACGTGTTCGGAGATAGTACATTCCTGTCTTGAGAC 29205 Query 80069 CCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGA 80128 | || ||||| |||| | ||||| ||| |||| || | || |||| | ||| Sbjct 29206 CTTTTTTCCATGCGTAGAAATGCATCGAAGTGAGTTTACTGACAGTCGGGTCGGCAATGT 29265 Query 80129 AGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCATTTCAATAA 80188 || || || || ||| |||||| ||| | || || ||||| || ||||| || | || Sbjct 29266 GAATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAA 29325 Query 80189 TTGACTTTTGTGGAATTTCCCATACTGT 80216 | | |||||| |||||||| ||||| Sbjct 29326 TCGCCTTTTGCTTGATTTCCCAAACTGT 29353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570231034178960