Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq546 116 3e-21 seq3374 84.2 2e-11 >seq546 Length=49788 Score = 116 bits (128), Expect = 3e-21 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||||||||| || || || ||||||||| |||||| | || || ||| | Sbjct 29999 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 30058 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| || || || || ||||||||||| |||| || Sbjct 30059 AGATACTATCGACAAT--GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGAC 30116 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 |||||||| ||||||||||||| |||||| |||| |||| ||||| ||||| | ||||| Sbjct 30117 CAGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTG-CGGATTA 30175 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| || |||||| || | ||| |||| | ||| | ||||| || Sbjct 30176 CAACATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 30226 >seq3374 Length=57302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 27891 AGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG 27950 |||| |||| ||| || || || | |||||||| || ||||||||||| || | || Sbjct 26685 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 26744 Query 27951 CAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCG 28010 | || | |||||||||||||| ||||| ||||| || ||| ||||| | || || || Sbjct 26745 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 26804 Query 28011 TGGCGG 28016 ||| || Sbjct 26805 TGGTGG 26810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355814115366291