Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq546 125 5e-24 seq8657 122 6e-23 seq3374 84.2 1e-11 >seq546 Length=49788 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || |||||| | |||||||| || | Sbjct 29316 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 29375 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||||||||| | || || ||||| Sbjct 29376 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 29435 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || |||||||| ||||||| ||| || | | ||||||||| Sbjct 29436 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 29495 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || || || ||||| Sbjct 29496 ATTCAGAAAGAATCAACGTTGCACTTAGT 29524 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || || | ||||| || || | Sbjct 29999 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 30058 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | ||||||||||| | || ||||| | Sbjct 30059 AGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGACC 30117 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| |||||| | | ||||||| Sbjct 30118 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACA 30177 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 30178 ACATTCAGAAAGAGTCTAC 30196 Score = 118 bits (130), Expect = 7e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || |||||||| || ||| | ||||| || || | Sbjct 29543 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 29602 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 29603 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29662 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||||| ||||||| ||| ||| | | |||||||| Sbjct 29663 GCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAA 29722 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || ||||| Sbjct 29723 CATCCAGAAAGAATCAACGTTGCACTTAGT 29752 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || ||| | ||||| || || | Sbjct 29771 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 29830 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 29831 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 29890 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||| |||||||| ||||||| ||| || | | |||||||| Sbjct 29891 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 29950 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || || || Sbjct 29951 CATCCAGAAAGAATCAACGTTGCACTTGGT 29980 >seq8657 Length=30266 Score = 122 bits (134), Expect = 6e-23 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 23600 AATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||||||| ||||||||||||||| || || ||||| || ||||| |||||||| || Sbjct 26168 AACTACTTAAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAG 26109 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || || | ||||| | || ||| | || | || | || ||||| ||||| | Sbjct 26108 GTCGAATCATCCGACACCATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGAAT 26050 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || ||||||||||| || || || || |||||| |||| |||| || || | Sbjct 26049 TCCTCCCGACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCT 25990 Query 23778 AGGCGATTACAACATACAAAAAG 23800 | ||||||||||| ||||||| Sbjct 25989 CGCGGATTACAACATCCAAAAAG 25967 >seq3374 Length=57302 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || || ||||||||| | || ||||| || |||||| ||||||| | || Sbjct 26685 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 26744 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || |||| ||||||||||| || ||||| ||| |||||| | ||| || | || || Sbjct 26745 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 26804 Query 23832 AGGAGG 23837 || || Sbjct 26805 TGGTGG 26810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337963737695564