Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq513 188 2e-42 seq546 136 9e-27 seq8657 114 3e-20 seq1019 114 3e-20 seq8043 111 4e-19 seq92 111 4e-19 seq44 109 1e-18 seq2993 102 2e-16 seq202 89.7 1e-12 seq38 84.2 5e-11 >seq513 Length=1785 Score = 188 bits (208), Expect = 2e-42 Identities = 216/288 (75%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| ||||||| ||||| || |||| ||||||| | | ||||||| | Sbjct 1692 ACTTTATATTTAATTTTTGGTGCTTTTTCAGG-ATTAGTAGGTACAACACTTTCTATTTT 1634 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| ||| || || | |||||| ||| | || Sbjct 1633 AATTCGTATGGAATTATCACAACCTGGTAATCAGATTTTTATGGGTAATCATCAATTATA 1574 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||| || ||||||||||| ||| | |||||||| ||| | Sbjct 1573 TAATGTAGTTGTAACAGCACATGCGTTCGTTATGATTTTTTTTATGGTTATGCCTGTTTT 1514 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| |||||||| || | ||||||||||| || || |||||||||||||| Sbjct 1513 AATTGGAGGTTTTGGAAATTGGTTTATACCTTTAATGATAGGAGCCCCTGATATGGCTTT 1454 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || |||||||||||||| ||| | || ||||| ||||| Sbjct 1453 TCCTAGAATGAATAATATAAGTTTTTGGTTATTGCCTCCTTCTTTATT 1406 Score = 113 bits (124), Expect = 1e-19 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| ||||| || |||||||||||||| | |||||||| ||||| ||||| Sbjct 1009 TTCAGGATGACCGAAAAACCAAAATAAATGTTGATATAATATAGGATCACCTCCACCTGA 1068 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 1069 AGGATCATAAAAAGAAGTATTTAAATTTCTATCTGTTAATAACA 1112 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 371385 TAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGA 371444 |||||| || ||||||| ||| |||| || | || ||| ||||| || |||| | ||| Sbjct 1207 TAAACCTGGAGCTCTCATGTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAGA 1266 Query 371445 AGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGC 371504 ||| || || | | |||||||||||| ||||||||||| || ||| || || || || Sbjct 1267 AGAAATTCCAGATAAATGTAAACTAAAAATTGCTAAATCTACCGAAGGACCTGAATGTGC 1326 Query 371505 TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 | ||| | ||| || || ||||| || || || |||| Sbjct 1327 TTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 1367 >seq546 Length=49788 Score = 136 bits (150), Expect = 9e-27 Identities = 164/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | ||| Sbjct 29765 ACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGT 29706 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || |||||||| || || ||||||||||| || ||||| || || || ||||| || Sbjct 29705 ACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 29646 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || || |||||||| | || || || || Sbjct 29645 TTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAA 29586 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | |||||| Sbjct 29585 AGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 Score = 125 bits (138), Expect = 2e-23 Identities = 137/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | |||||||| || | |||| || |||||||| || || ||| Sbjct 29512 GTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCA 29453 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || ||||| || || || ||||| ||||| |||||||| ||||| ||| Sbjct 29452 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 29393 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 ||| ||||| |||||||| | || || || || ||||| ||||| || || | ||| Sbjct 29392 ACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 29333 Query 225697 TT 225698 || Sbjct 29332 TT 29331 Score = 123 bits (136), Expect = 6e-23 Identities = 161/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | || Sbjct 29993 ACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGT 29934 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || |||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 29933 TCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 29874 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || || ||||| || | || || || || Sbjct 29873 TTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAA 29814 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || |||| || || | || | ||||||| Sbjct 29813 AGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29771 >seq8657 Length=30266 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 26026 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 26027 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 26086 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||||||||| || | ||| || || | ||||| || || || || | || || | || Sbjct 26087 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 26146 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 26147 AAATCTGCATT 26157 >seq1019 Length=872 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 425 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 366 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 365 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 308 >seq8043 Length=2724 Score = 111 bits (122), Expect = 4e-19 Identities = 89/105 (85%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 1497 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 1438 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 1437 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 1393 >seq92 Length=2558 Score = 111 bits (122), Expect = 4e-19 Identities = 89/105 (85%), Gaps = 2/105 (2%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 598 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 539 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 |||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 538 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 494 >seq44 Length=490 Score = 109 bits (120), Expect = 1e-18 Identities = 75/85 (88%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 372623 AGGTGTAACAGAATAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTTG 372682 |||||| ||| ||| |||||| ||||||||||| |||||||||||||||| ||||| | | Sbjct 137 AGGTGTCACAAAATTGAGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATGG 196 Query 372683 TAAAACGATGTATAGGGTCTGACAC 372707 ||| | ||||||||||||||||||| Sbjct 197 TAACATGATGTATAGGGTCTGACAC 221 >seq2993 Length=1160 Score = 102 bits (112), Expect = 2e-16 Identities = 106/138 (77%), Gaps = 1/138 (1%) Strand=Plus/Plus Query 7725 ATTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCT 7784 || || ||| ||||||| ||||| ||||| || ||||||||||||| |||||||||| Sbjct 573 ATGTCAAGGCCTGGTAAGGTTCTTCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCT 632 Query 7785 TATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG- 7843 | | | | |||||| || |||||||||||||||||||| |||| | | |||| || Sbjct 633 TGTGCGGGCCCCCGTCAATTCATTTGAGTTTTAACCTTGCGGCCGTACTCCCCAGGCGGT 692 Query 7844 AATATTTACGCGTTAGCT 7861 | || | ||||||||| Sbjct 693 CAACTTAATGCGTTAGCT 710 >seq202 Length=498 Score = 89.7 bits (98), Expect = 1e-12 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 97 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 38 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTT 7822 | | || |||||| || |||||| ||| |||||| Sbjct 37 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTT 1 >seq38 Length=2574 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 371784 TTTTGGTAGGCTCTTTATCCTTAACTGGATTTCCGTTTTTGACCGGTTTCTATTCTAAAG 371843 |||| |||| |||||||| |||| |||||||| ||||| | ||||| |||||||||| Sbjct 2054 TTTTAATAGGTTCTTTATCTTTAATAGGATTTCCTTTTTTAAGTGGTTTTTATTCTAAAG 1995 Query 371844 AAGTAGTTTTAGAGATAGCATTTTCTAAGTTTTCGATTAATA-GtttttttATTTATTGA 371902 | || | ||||| ||||| |||||| |||||| ||| | || |||| |||||| Sbjct 1994 ATTTAATATTAGAAATAGCTTTTTCT-AGTTTTAATATAACAGGTCATTTTGCTTATTGG 1936 Query 371903 TTA 371905 ||| Sbjct 1935 TTA 1933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192361095486302