Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000313105.1_202012-11-06] 11,133 sequences; 32,990,475 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq546 190 4e-43 seq8657 168 1e-36 seq252 152 1e-31 seq3374 114 3e-20 seq3466 98.7 2e-15 seq464 87.8 4e-12 >seq546 Length=49788 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || |||| || ||||| |||||| ||||||||||| || ||| Sbjct 29998 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 29939 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || || ||||||||||| ||||| ||||||| |||||| || ||| ||| Sbjct 29938 AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGA 29879 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || ||||||||||| | |||||| Sbjct 29878 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACT 29819 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||| || || || || |||| |||||||| || || |||||| Sbjct 29818 TCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29771 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| |||||||| || | || ||||| |||||| || |||||||| || ||| Sbjct 29542 CCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGCA 29483 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||| || || || ||||||||||| || || ||||||| |||||| || ||| ||| Sbjct 29482 AGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 29423 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || || |||||||| ||||| || ||||| ||||||| ||||| |||| || ||| Sbjct 29422 ATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACT 29363 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | |||||| ||||| || || | || || || || |||||||| Sbjct 29362 TCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 29316 Score = 179 bits (198), Expect = 8e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| || |||||||||||||| | ||| ||||| || |||||||| || || Sbjct 30227 ACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGC 30168 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||||||||| || || || |||||||| |||||||| || | |||||| ||||| || Sbjct 30167 AAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGG 30108 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| || || ||||| |||||||| || || || | |||||||| || |||| ||| || Sbjct 30107 AATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCAC 30048 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 ||| | || || || || || |||| |||||||| || || |||||| Sbjct 30047 TTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 29999 Score = 172 bits (190), Expect = 1e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || || | || ||||| |||||| ||||||||||| || ||| Sbjct 29770 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 29711 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || ||||||||||| || || ||||||| |||||| || ||| ||| Sbjct 29710 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 29651 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| |||||||| || || ||| | || |||||||| || | || ||| Sbjct 29650 ATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACT 29591 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100 || | ||| || || || || ||||| || || || |||||||||||| Sbjct 29590 TCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 29543 >seq8657 Length=30266 Score = 168 bits (186), Expect = 1e-36 Identities = 152/191 (80%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 282910 CTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGA 282969 |||||||||||||||| || || ||||| ||||| ||||| | |||||| || || || | Sbjct 25967 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 26026 Query 282970 TCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTAT 283029 ||||||| |||||||| ||||| || ||||||||||| ||||| || || || ||| Sbjct 26027 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 26086 Query 283030 CGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGA 283089 |||| ||||| || | |||||| || |||||||| || || || || | ||||| |||| Sbjct 26087 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 26146 Query 283090 ATATCTGCATT 283100 | ||||||||| Sbjct 26147 AAATCTGCATT 26157 >seq252 Length=71148 Score = 152 bits (168), Expect = 1e-31 Identities = 689/1065 (65%), Gaps = 53/1065 (5%) Strand=Plus/Plus Query 316154 CAAGTGATTCTTTGTCTTCACCGGAAGCATAACGCCATTGGATGTACTGATTGGGCGTCA 316213 ||||| |||| |||||||| ||||| | | | ||| || || || ||||| | |||| Sbjct 8223 CAAGTAATTCCTTGTCTTCTCCGGATTGAAATCTCCACTGAATATATTGATTTGCAGTCA 8282 Query 316214 TGTCAAGATGATCCTCGATGTGGTGGAAAGCGTGCTGTGCCACGTAAGCAAGACGCATAT 316273 || ||||| | |||||||| ||||| |||| |||||| || || |||| || | Sbjct 8283 GATCGAGATGTGCTTCGATGTGATGGAATGCGTTCTGTGCAACATAGGCAAATCGTAAGC 8342 Query 316274 TTGGATGCTTCCAAACGCTACCGTTAGTAGTTTCCATCTGCCCTGTTAGCACTTTAATGA 316333 ||||||| ||||| || | || | |||| |||| | || || |||| || || | Sbjct 8343 TTGGATGTTTCCACACAGTTCCACTCGTAGGCTCCACTTCACCAGTCAGCATCTTGATCA 8402 Query 316334 GAGTACTTTTTCCCGCGCCGTTTTCACCCACGACACCGATCCTGGAGTTGAGC-GATACC 316392 ||| |||||| || || ||| |||| ||| |||| | || |||| | || Sbjct 8403 AGGTAGATTTTCCTGCTCCATTTGGTCCCAACACAGCGATTC--GACTTGACAAGGCACA 8460 Query 316393 TGGG-CATTCACGTTGTCGA-AGACCAGTTTGTC-CGTCCCAGGATACTTGAA--ACCCA 316447 | | || | || || |||| ||||||| ||||| |||||| || | | | | Sbjct 8461 AGTGACAGAGATATTACTGATAGACG-GTTTGTCTCGTCC-AGGATAAGTGTATGAGCAA 8518 Query 316448 CCCCGC-GAAGCTTCATGATGGC--ACGGTCCTTCGAAGTGATACCCTCGAGAAAGCCGG 316504 | | || | | || ||| || | ||| ||||| | | ||||| || | Sbjct 8519 TTCGTCAGACGGATAAT--TGGTTTACCCTTGTTCT---TGATATCTGCAAGAAAACCCG 8573 Query 316505 GTTCGGGGAATTTCCAC--GTAGTCTTCGTCTCGGCGAGCGTGTAGTAACTTGCAGATTC 316562 |||| || || || | | | | || || | | |||||||||| | || Sbjct 8574 GTTCAGGAAACTTGAAGTGGAATAATGCGGCTT--CCAATTCGTAGTAACTTCTGGCCTC 8631 Query 316563 GGGACGCTTC---TTCACGAATTCGGACAGATTTCCTTTATACTTCTTCAGCTTCAGGTT 316619 || |||| || || || || |||| ||| ||||| ||| |||| ||||| | Sbjct 8632 AGG---CTTCACTTTGACAAACTCTGACAAATTCCCTTTGTACGTCTTGAGCTTGCGT-- 8686 Query 316620 GGGTTCGTAATGGATGATAGAAGTACAGACAGCATCGAGGAAACCAGAATCGTGTGATAC 316679 | |||||| || | || ||||| ||| ||| | ||| |||| ||||| ||||| Sbjct 8687 -GCTTCGTAGTGAACAATGTTCGTACAAACATGATCCAAGAATCCAGGGTCGTGGGATAC 8745 Query 316680 AATCACACATGAAACGCCTTTTAGGTTGACCAGATAGTCGATCAGCCAGCTCACATTCGA 316739 ||||| || | |||| || ||| || ||||| ||||||| |||||| Sbjct 8746 AATCATACTGGTAACGTTGGGTAAATTGTTCAAATAGTTTTCCAGCCAGGCGACATTCTT 8805 Query 316740 CACAGAAAGATGGTTGGTCGGTTCGTCAAGTAGTAGTAGCTTCGCGTCCAACAGCATAGC 316799 ||| |||||||| || ||||| ||||| || || | | || | || || ||| || Sbjct 8806 TACATCGAGATGGTTCGTAGGTTCATCAAGAAGCAGAACATCAGCTTGCATCAACATGGC 8865 Query 316800 GCGTGCGAGAGCAAGCTTCATTTTCCACCCCCCGGAAAGAGTGTTAATCGGGGCAGATTG 316859 || ||||| | |||||||||||||| || || || | || | ||| | ||| Sbjct 8866 ACGAGCGAGTTCTAGCTTCATTTTCCATCCACCCGATAAAGATGAGACCGGTAAATGTTG 8925 Query 316860 GCGCTCAACATCAAAGCCAACTGATTCGAGAGTAGACACGATTTTTTCACGAGAC--CAT 316917 ||| || || || || | || || || || | || ||| || ||| Sbjct 8926 CATTTCATCAGTGAACCCGAC-GCTT---GA-TAAAC-------TATCGCGA-ACTTCAT 8972 Query 316918 ---GTGTT--TTCTTTAACTTGGTCGTCATTGGCAATGAAGTCAACGATAGACGTGTTAG 316972 ||| | |||||| | | || ||| ||||| || | || || | | Sbjct 8973 CTCGTGGTACTTCTTTCAACTCTTCATCACAAAACATGAATTCTATGACAGGAAGCATCG 9032 Query 316973 ATTCGGATCCGTCGAGGTCATGCTCAACATATGCAGTTTTCAGAATATCCTTCGTCGGGA 317032 ||| || | | | | ||| || ||| | |||| || || ||| || | ||| | Sbjct 9033 CTTCAGAAGCCTGCAAATTATGTTCGACAAACACAGTCTTTAGCTCATCTTTAGACGGAA 9092 Query 317033 ACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTGCCAGCA-CCATTG 317091 | ||||||| || ||||| | || || |||||||| || || || || ||| ||||| Sbjct 9093 ATCCTTCCAGTTGGCCGTTAGCGATGGCTCTCATCAGCGTTGATTTACC-GCATCCATTT 9151 Query 317092 GGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTGTTGTTCAGAAGA 317151 || || || |||||||| |||| ||| |||||| | || |||| ||||||||| ||| Sbjct 9152 GGACCACAGAGACCATAACGATGTCCTCTCTTCAAACGCAACCGGGCGTTGTTCAGTAGA 9211 Query 317152 ATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCC 317196 ||| |||||||||| |||| |||||||||||||| ||| || ||| Sbjct 9212 ATCATACCACCATACGCCAAAGAGAACTCACAATTACATAGATCC 9256 >seq3374 Length=57302 Score = 114 bits (126), Expect = 3e-20 Identities = 101/126 (80%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| | || || ||||||||||||||||||||||| ||||||||||| || || Sbjct 26811 ACCACCACGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGGATGTTGTAATCCGC 26752 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 | || || ||||| || | ||||||||| ||||| || | ||| |||||||| || Sbjct 26751 TAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGGG 26692 Query 282992 AATACC 282997 |||||| Sbjct 26691 AATACC 26686 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 ||||| ||||||||||| |||||||| || || ||||||| || || | | || || Sbjct 26635 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 26576 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 || | ||||||||||| || || |||||||| || || |||||||| Sbjct 26575 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 26529 >seq3466 Length=44099 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || || || || || || |||||||| |||||||| || | ||||||||||||| ||| Sbjct 36130 AGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGA 36071 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || || ||||||||||| ||| ||||| || || | || || ||||||| | ||| || Sbjct 36070 ATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTAC 36012 Query 283052 TTCGAGAGTGATCGTCTTACC 283072 |||||| || || || || || Sbjct 36011 TTCGAGTGTAATTGTTTTTCC 35991 >seq464 Length=101 Score = 87.8 bits (96), Expect = 4e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 282939 CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCC 282998 || || || ||||||||||| || || ||||||| |||||| || ||| ||||| || Sbjct 1 CGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCT 60 Query 282999 TCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC 283039 |||||||| |||||||| || || ||| | || |||||||| Sbjct 61 TCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTC 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046589891484982