Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3366 262 4e-65 >seq3366 Length=157547 Score = 262 bits (290), Expect = 4e-65 Identities = 596/878 (68%), Gaps = 24/878 (3%) Strand=Plus/Plus Query 15917 TAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATA 15976 || || | ||||||||| || || ||||| |||||||| | | ||| || | ||||| Sbjct 38970 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCATC 39029 Query 15977 AAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAGTTCC-GTAACTAATCT 16035 | ||||||||||||| ||| | ||| ||| | || ||| | ||||| |||| Sbjct 39030 CAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAAC-AATCG 39088 Query 16036 ATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAG-TCGTA 16094 ||| || ||||| || || ||||||| ||| || |||| ||||| || || ||| | Sbjct 39089 ATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG-A 39147 Query 16095 CCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGG 16154 | ||||| | | | || ||||| |||||| || | ||| || || |||||| | Sbjct 39148 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCA- 39206 Query 16155 TGGCTCGTGT-TTCAGACGGTGTATGGTTTAGGTGTTTAAA---CATTAGACACGCGAAG 16210 || | | | ||| | | ||| ||| |||| | ||| ||||| || ||| Sbjct 39207 TGAATAGAGCCTTCTGGAAGCTTAT---TTACCAGTTTCGAGTACATCAGACATGCAAAG 39263 Query 16211 TCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATT 16270 || |||||||||||||| || | ||||| || || || ||||| | || ||||| Sbjct 39264 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 39323 Query 16271 TTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTC 16329 |||||||||||| | ||| ||||| | |||| ||||| || || || || || || || Sbjct 39324 AATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTTC 39382 Query 16330 AACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCAT-CTTTATTACGAATCCATT 16388 || | ||||| || | | || ||| || ||| |||| |||| || | ||||| Sbjct 39383 GACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCATT 39441 Query 16389 TCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATT 16448 || |||||| ||||| | | | || || ||||| || || | || | Sbjct 39442 TCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTAAAT 39501 Query 16449 TCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGT 16508 || |||||| ||| | || || |||||||||| ||| |||| ||| |||| Sbjct 39502 GCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGT 39561 Query 16509 GTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTT 16568 |||| || ||||| || || || |||||||| ||||||||||| |||| ||||| || | Sbjct 39562 GTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAACCT 39621 Query 16569 C-CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAAC 16627 | | | |||| | || || || ||||| || || || ||||| || ||||| || Sbjct 39622 CACTGCTGAAATTCAT-GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAGAAG 39680 Query 16628 GCCAATATGTGCTTAATGAAATATTTTTC---GTCAGATGTAAGAATATGCCAATCTTTT 16684 ||||| | ||| || || || | | | || ||| ||| | | || |||| || || Sbjct 39681 GCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGAT---ATATTAAGCCAGTCATTC 39737 Query 16685 AAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATAC 16744 | || | | ||| | |||||||| ||||||||||| ||| |||| || |||||| Sbjct 39738 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 39797 Query 16745 ATTTTCCAAATATCATTGTATTGTATGGGAAATACGAC 16782 || | |||||| ||| | |||||| ||||||| ||| Sbjct 39798 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGAC 39835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511338141720280