Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3366 226 3e-54 seq113 219 5e-52 >seq3366 Length=157547 Score = 226 bits (250), Expect = 3e-54 Identities = 422/610 (69%), Gaps = 11/610 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 39247 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 39306 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 39307 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 39365 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || |||||||| || ||||||||||| | | ||||||| || | ||| Sbjct 39366 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 39425 Query 24306 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 39426 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 39484 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | | || | |||||| | |||||| | |||||||||||||| | Sbjct 39485 AATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAA 39544 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| |||||| || || ||||| || || ||||| ||||| || || |||| ||| Sbjct 39545 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGC 39604 Query 24482 CTCGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 || | || || || || | | ||| || | || | ||||||||| || || || Sbjct 39605 TTCCGGGATTTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCA 39662 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 |||||||||||||| || ||||| || ||||| ||||| | | | || | | || Sbjct 39663 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATA 39722 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 39723 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 39782 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 39783 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 39842 Query 24720 TTTGGATTTT 24729 || ||||||| Sbjct 39843 TTCGGATTTT 39852 >seq113 Length=12257 Score = 219 bits (242), Expect = 5e-52 Identities = 1024/1619 (63%), Gaps = 14/1619 (1%) Strand=Plus/Minus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 5237 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 5178 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 5177 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 5118 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 5117 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 5058 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||| ||| | || | ||| | || | | ||| ||| | ||||| | | Sbjct 5057 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATTCTT--T 5000 Query 53685 CTATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || |||| | || || |||||| || || |||| ||| || || || || || || | Sbjct 4999 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4940 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 4939 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4880 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| || ||||| || || || ||||| || | ||||| || || ||||| Sbjct 4879 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 4820 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||| || | ||| || ||| | | || || | | | | | || Sbjct 4819 CTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTT 4760 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||| | ||| || ||||| ||| |||||| | | | || Sbjct 4759 TTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAAGTCG 4700 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || | |||||| | || ||| ||| || || | ||| ||||||||||| Sbjct 4699 TGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAA 4640 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||||||||| ||||| ||||| | || ||| || ||||| Sbjct 4639 CAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTCCATG 4580 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| || || || ||| | | ||||| | |||||| || || | || || | Sbjct 4579 ATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAATTGC 4520 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||| || || || ||||| | ||||| ||| |||| ||| | || Sbjct 4519 AAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAACAC 4460 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | |||||||| ||| ||||| || ||||| |||||| ||||| || | Sbjct 4459 CCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGT 4400 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||||||| ||| | || || || || ||| || || || | || || Sbjct 4399 GGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACA 4340 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | |||| | ||| || || ||||| || ||| |||||| |||| | ||||||||| Sbjct 4339 TTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACA 4280 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | |||| | ||| ||||||||||| || | || |||| || |||||||| Sbjct 4279 CGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAA 4220 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | | | ||||| || | | | | || | || | || || || Sbjct 4219 GAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGTGTAT 4160 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||||| ||| || || || | |||| | || || | Sbjct 4159 GCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCACACG 4100 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || || || ||||| |||| ||||||||| |||||||||| ||| |||||||| || Sbjct 4099 CAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 4040 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||||| | || ||||| || || | | |||| | || ||| || | Sbjct 4039 ACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACATCGT 3981 Query 54703 TG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 || | |||| |||| | ||| ||| | || | || |||||| Sbjct 3980 TGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA---T 3925 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || |||||| || | ||| ||||| | ||| |||| ||| || | || |||| | Sbjct 3924 TGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAATTCGA 3865 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || | ||| |||| ||||||||||| | || ||||| |||| |||| | Sbjct 3864 GCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCC 3805 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 54937 | ||||||||| || || || || ||| | || || || ||| || | Sbjct 3804 AATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTGAGAT 3745 Query 54938 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 54997 |||| | ||||| | | || ||||||||| || || | |||| | || || | Sbjct 3744 ATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCGCGCA 3685 Query 54998 GTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || || |||| ||| || ||| | ||||| |||||| ||||||| Sbjct 3684 GTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACATTTT 3626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593633068687920