Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3366 122 9e-23 seq6751 91.5 2e-13 seq343 86.0 6e-12 >seq3366 Length=157547 Score = 122 bits (134), Expect = 9e-23 Identities = 315/473 (67%), Gaps = 8/473 (2%) Strand=Plus/Minus Query 116729 GACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATC 116788 ||||| ||| | || || ||||| |||||| ||||||| || || ||||| || || || Sbjct 39715 GACAATGAGAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGGATT 39656 Query 116789 GTCAACGAGAATCTGGTCGAGCGTTTCGCTCAG-GAGGTGCAGGTGGCCGAGGCGCGGTG 116847 || || || ||||| | | | |||| ||| ||||| || | | || || || || Sbjct 39655 GTTAATGAAAATCTCGCCATGAATTTCAG-CAGTGAGGTTCAAATCCCGGAAGCTCGATG 39597 Query 116848 CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTCAT 116907 ||| || || || || || || || || || | ||||||||| |||||||| | || Sbjct 39596 CTTTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTGAT 39537 Query 116908 CGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGAT 116967 || || ||| | | | || || | | ||| | ||| || || || || Sbjct 39536 TGATACATACATCAAAGATCCAACCGAAAAACAGCATTTACTATGCGCGATTGAAACAAT 39477 Query 116968 GCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAG-AGGCCG 117026 |||||||| | | || || | |||||| || ||| || || || | ||| Sbjct 39476 CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATC-CAAAGTATGCCT 39418 Query 117027 CCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTT 117086 | || | || | |||| ||||| ||||||||||| || |||| || || || | Sbjct 39417 CGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGGATCAT 39358 Query 117087 TCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC--TGACTTTCAGCAA 117144 || | | ||||||||||| |||||||| || | ||||| || | || ||||| || Sbjct 39357 TCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTTTCA--AA 39300 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||||||| | || || || || ||||| |||||||| ||| || ||| Sbjct 39299 TGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCTGATGT 39247 >seq6751 Length=68926 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || |||||||| || || || |||||||| | || || || | | Sbjct 4864 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4923 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| |||||||| || || || | || ||| Sbjct 4924 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4983 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| || |||| ||| || ||||| || || |||| || || || || |||||| Sbjct 4984 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 5043 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| || | ||| |||| ||||| Sbjct 5044 ATCCAGAAAGAATCAACGTTGCACTTAGTG 5073 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || ||||| || || ||||| || || | || || ||| | | Sbjct 5547 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 5606 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | | |||| || || | |||||||| || || || | ||||| Sbjct 5607 AGATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCA 5666 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || || | || || ||||| ||||| |||| ||||| || || ||||| Sbjct 5667 GCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAA 5726 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| ||||| ||| | ||||| ||||| || Sbjct 5727 CATTCAGAAAGAGTCTACGCTTCATCTGGT 5756 >seq343 Length=30199 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 40686 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGC 40745 || |||||| || ||||| || || ||||| || ||||| ||||| | || |||||| | Sbjct 12806 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 12747 Query 40746 CACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | | | | |||| || |||| ||||| || || || || | || Sbjct 12746 ATCCGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 12687 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||| || || | || | ||| || ||||| |||| |||| || || ||| || || Sbjct 12686 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 12627 Query 40866 CAACATCCAGAA 40877 ||||||||| || Sbjct 12626 CAACATCCAAAA 12615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515142374377040