Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq2177 123 4e-23 seq6751 111 2e-19 seq957 104 4e-17 seq343 102 1e-16 >seq2177 Length=6073 Score = 123 bits (136), Expect = 4e-23 Identities = 273/406 (67%), Gaps = 5/406 (1%) Strand=Plus/Plus Query 205384 TGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCATATGGTTTTAAATTA 205443 ||||| | || ||||| |||| || || ||||| ||| || |||| | || | Sbjct 4744 TGATTCATGTAGATATGGGCATCTCCGATCACATGAACAAACTCGCCGGGTTGGAGATCA 4803 Query 205444 GTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACATTAAATGGTACACCT 205503 || | ||||||||||| | ||||| | || ||||||| ||||||||| || || Sbjct 4804 GTCACGTGTGCAATCATTTTTGTCAAAAGCGCGTAGCTAGCAATATTAAATGGAACGCCC 4863 Query 205504 AAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTATTATTAATTACA 205563 | ||| |||||||| |||| || |||||||| |||| | ||| ||| || Sbjct 4864 AGACCAATATCAGCGGATCGCTGGTACATTTGGCATGATA---ATTCCCCATTTGCAACG 4920 Query 205564 TGAAATT-GTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACATCTATAGGATT 205622 | ||||| | ||| | |||||| || |||| |||| | | | ||| | ||||| Sbjct 4921 TAAAATTGGCACATGA-GATGACAGGGAGGTAATGCCATTTCGGCTAAATCGGTTGGATT 4979 Query 205623 CCAGGCTGTTAATATTATATTTCTAGATTCAGGtttattttttattttatttatAATATG 205682 ||| | | ||| || ||| || | | | | | | |||| | ||| | ||| | || Sbjct 4980 CCAACCGGATAAGATGATACGTCGACAATTTTGGTCAGTTTTGAGTTTGTGTATCACATC 5039 Query 205683 TGTTAATTGATCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACC 205742 | | ||||||||| || || | |||| | || |||||| | || | ||||| Sbjct 5040 GGCGAGTTGATCAAAGCCCTGGCCGCTGTAATCCGCATGCATATCTGTGTAACTTGCACC 5099 Query 205743 AAAATGACGCCATTGAAAACCATAAACTGGACCTAAATCACCTTCT 205788 ||||||||||||||||| || || | ||| |||||||| |||||| Sbjct 5100 GAAATGACGCCATTGAAAGCCGTAGATTGGTCCTAAATCGCCTTCT 5145 >seq6751 Length=68926 Score = 111 bits (122), Expect = 2e-19 Identities = 169/241 (70%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | || || || || || || || || ||| | || |||| | Sbjct 4861 ACCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCT 4920 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 || || || |||| |||| || |||||||| |||||||| || || |||||| Sbjct 4921 TCAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGAT 4980 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || ||| | || || || || ||||||||| |||| || | || || | | ||||| Sbjct 4981 CAGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTAC 5040 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAAT 124775 || || || ||||||||||| ||||| || || ||||| | || ||||| || ||| | Sbjct 5041 AACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAATGCAAATT 5100 Query 124776 T 124776 | Sbjct 5101 T 5101 Score = 111 bits (122), Expect = 2e-19 Identities = 190/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || || ||||| |||||| | || | || || Sbjct 5091 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 5150 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || || || ||||| || || |||||||| Sbjct 5151 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 5210 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || ||||||||| |||| || | ||||| | | ||||| || Sbjct 5211 GCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 5270 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAATT 124776 ||||| ||||||||||| ||||| || || | || | || ||||| || | | ||| Sbjct 5271 CATTCAGAAAGAATCAACGTTGCACTTAGTGCTTCGCCTCCGTGGTGGAATGCAGATATT 5330 Query 124777 CATAAAAA--TTGATTGTAAATAAATATCACT 124806 | |||| |||| || ||| || ||| ||| Sbjct 5331 TGTGAAAACCTTGACTGGAAA-AACTATAACT 5361 Score = 111 bits (122), Expect = 2e-19 Identities = 168/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| |||||| | || || | || || |||||||||||| | || | || || Sbjct 5319 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 5378 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||| || || || || ||||| || || |||||||| Sbjct 5379 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 5438 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || || |||||| |||| || | ||||| | | ||||| || Sbjct 5439 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 5498 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 || || ||||||||||| ||||| ||||| ||||| | || ||||| || ||| || Sbjct 5499 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAATGCAAATTT 5557 >seq957 Length=34123 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 124640 AGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCG 124699 |||||| || || || ||||| | || |||||||| || |||||||| || ||| |||| Sbjct 26817 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 26876 Query 124700 AACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACG 124759 |||||||| ||||| || || || |||||| || || ||| ||||| |||| ||||| Sbjct 26877 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 26936 Query 124760 AGGTGGTATTAAAAA 124774 |||||| ||| || Sbjct 26937 TGGTGGTGGTAAGAA 26951 >seq343 Length=30199 Score = 102 bits (112), Expect = 1e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | |||||||| || || ||||| || ||| | ||| | ||| || Sbjct 12803 AATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATC 12744 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || |||| | || ||| |||||||| || ||||| || || || || || Sbjct 12743 CGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCA 12684 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| |||||||||||||| ||||| | ||||| | | ||||| || Sbjct 12683 ACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAA 12624 Query 124718 TATTCAAAAAG 124728 || ||||||| Sbjct 12623 CATCCAAAAAG 12613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755343352067200