Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq6751 107 2e-18 seq343 98.7 9e-16 >seq6751 Length=68926 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| ||||| | || || ||||| || ||||||||||| | ||| || || || Sbjct 5073 CACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTC 5014 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || |||||||||||| |||| ||||| |||||||| ||||| || || || |||||| Sbjct 5013 TAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTG 4954 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||||| | ||| || || | || | || || Sbjct 4953 AATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTT 4894 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 || || || ||||| |||||||||||||||| Sbjct 4893 TCCAGTAAGCGTTTTCACAAAAATCTGCATGG 4862 Score = 107 bits (118), Expect = 2e-18 Identities = 153/212 (72%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTA--TCC 118586 ||| ||||| | || || ||||| |||||||||||||| | || || | ||| || Sbjct 5301 CACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 5244 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || |||||||||||| |||| ||||| |||||||| ||||| || || |||||||| Sbjct 5243 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCC 5184 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | || | ||||||| |||||| || | || | ||| Sbjct 5183 TGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTT 5124 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || ||||| || || |||||||| ||||| Sbjct 5123 TTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 5092 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCC 118586 ||||||||| | || || ||||| || ||||||||||| | || || | ||| || Sbjct 5529 CACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATC-CGCA-AGCGTTCGTCCGTCT 5472 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || || ||||| || ||| |||| ||||| |||||||| ||||| || || |||||||| Sbjct 5471 TCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCC 5412 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || || || | || | ||||| | ||| || || | || | ||| Sbjct 5411 TGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTT 5352 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || |||| ||||| ||||| |||||||| Sbjct 5351 TTTCCAGTCAAGGTTTTCACAAATATCTGCAT 5320 >seq343 Length=30199 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||||||||| | || || ||||| | |||||||| ||| | | Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 12672 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | | |||||| || |||||||| || || ||||||||| ||| || || || | | Sbjct 12673 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 12732 Query 118669 CGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACA 118727 ||| |||||| | || | |||||||| | || | ||||| ||||| || || || || Sbjct 12733 CGATGGTGTCGGATGAT-TCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACG 12791 Query 118728 AAAATCTGCAT 118738 ||||||||||| Sbjct 12792 AAAATCTGCAT 12802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433767327702868