Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3366 185 8e-42 seq6751 118 9e-22 seq343 93.3 4e-14 >seq3366 Length=157547 Score = 185 bits (204), Expect = 8e-42 Identities = 593/896 (66%), Gaps = 52/896 (6%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 39838 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 39779 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 39778 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 39719 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| |||||| | ||||| |||||||||||||| || || || || |||| Sbjct 39718 TCGGACAAT--GAGAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 39661 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA-CA-AGAAGTGCAAGTGACGGAGGC 57775 | |||||||| || ||| | | | | || ||||| || || || ||| | |||| || Sbjct 39660 GGATTGTTAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAAATCCCGGAAGC 39603 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||| ||||| ||| | || || ||||| | || || ||| |||||||| | Sbjct 39602 TCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 39543 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAA--CGCGA 57891 | | || ||||| ||| | || || |||| ||| |||| || | | | | ||||| Sbjct 39542 ATTGATTGATACATACATCAAAGATCCAAC--CGAAAAAC--AGCATTTACTATGCGCGA 39487 Query 57892 TCGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAA 57946 | |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| | Sbjct 39486 TTGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCA 39428 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 ||| ||| |||| || || || | | || || || ||||||||||| || || Sbjct 39427 AAG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTT 39372 Query 58007 CTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 || || || || ||| | ||||||||| |||||||||| || ||||||| || | Sbjct 39371 TTTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGAC 39313 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | ||| || ||| | || || || || || || ||| ||| ||||| || | Sbjct 39312 TTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTC 39253 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACC 58184 | |||||||| | | || ||||| | | | || || || || | || || || Sbjct 39252 TGATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCC 39194 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 || || || |||||| | || ||||| || | || || || | | | || Sbjct 39193 GACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGA 39134 Query 58245 ATGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCT 58300 ||||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 39133 ATGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACA 39078 Query 58301 CGAACTGATTGGAGAGCGTCA-----TTACAACACG--AAAAATCCGTTTGATTTTATGA 58353 | || ||| |||||| ||| | |||| ||||| ||||| | ||| Sbjct 39077 TGCAC---TTG----GCGTCAGCAAGTTATATCACGCTTCTAATCCCTTTGACTGGATGG 39025 Query 58354 ATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 || |||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 39024 ATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 38969 >seq6751 Length=68926 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | || Sbjct 5548 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 5607 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| ||||| | || || |||||| Sbjct 5608 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 5667 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || ||||| |||||||| || | ||||| ||| Sbjct 5668 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 5727 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||| ||||| || || ||||||||||||||| | || | || ||||| Sbjct 5728 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGGTAG 5777 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || || | || Sbjct 5092 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCG 5151 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || || || |||||||||||| | || || || ||| Sbjct 5152 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 5211 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 || ||||| || |||||||| ||||| | |||||| | | || || | ||||| | Sbjct 5212 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCT-TGCG-GATTACA 5269 Query 31371 ACATTCAAAAAGAATCGAC 31389 ||||||| |||||||| || Sbjct 5270 ACATTCAGAAAGAATCAAC 5288 >seq343 Length=30199 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 12802 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 12743 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 12742 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 12683 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 12682 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 12647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445699930657680