Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq113 237 2e-57 seq3366 208 1e-48 >seq113 Length=12257 Score = 237 bits (262), Expect = 2e-57 Identities = 1035/1624 (64%), Gaps = 24/1624 (1%) Strand=Plus/Minus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 || |||| || |||||||| || | || || || || | || | ||| ||||||| Sbjct 5237 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 5178 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 5177 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 5118 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 5117 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 5058 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 5057 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATT--CTTT 5000 Query 62923 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 4999 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4940 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 4939 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4880 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 4879 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 4820 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63156 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 4819 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 4762 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| ||||| ||| || || || ||| |||||| | | | Sbjct 4761 T--TTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 4704 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 4703 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 4644 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 |||| ||||| || ||||||||||| ||||| ||||| || || ||| || |||| Sbjct 4643 TAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTC 4584 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || || ||| | | ||||| | |||||| || || | || | Sbjct 4583 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 4524 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 4523 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 4464 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || | | |||||||| ||| || || || | ||||| || ||| ||||| | Sbjct 4463 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 4404 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 4403 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 4344 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||| | |||||| || ||||| || || |||||| |||| | ||||| Sbjct 4343 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 4284 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| || | |||| | |||| ||||||||||| || | || |||| || |||| Sbjct 4283 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 4224 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | |||| || | | | ||||| || | | | | || | || | || | Sbjct 4223 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 4164 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA-ACAATTTTGTTGTTT 63815 | || || || || || ||||||| ||| || || || | |||| ||| |||| || Sbjct 4163 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCATTC 4105 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | ||||| || ||||| |||| ||||||||| |||||||||| ||| ||||||| Sbjct 4104 ACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCT 4045 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 | || ||||| | |||||||| || || | | |||| || || ||| Sbjct 4044 CTATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCAC 3986 Query 63936 ATACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 || ||| | |||| |||| | ||| ||| | ||| | || |||| Sbjct 3985 ATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATA 3927 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 | | || |||||| || | ||| ||||| | || |||| ||| || || || | Sbjct 3926 A---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAA 3870 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 ||| || || | ||| |||| ||||||||||| | || ||||| |||| | Sbjct 3869 TTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTG 3810 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 |||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 3809 CTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCT 3750 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATAC 64230 || ||||| | ||||| | | || ||||||||| ||||| | |||| | || | Sbjct 3749 GAGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTC 3690 Query 64231 GAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACA 64290 | | |||||||| || || |||| ||| || ||| | ||||| |||||| ||| Sbjct 3689 GCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACA 3630 Query 64291 TTTT 64294 |||| Sbjct 3629 TTTT 3626 >seq3366 Length=157547 Score = 208 bits (230), Expect = 1e-48 Identities = 415/608 (68%), Gaps = 9/608 (1%) Strand=Plus/Plus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 |||||| |||||| || || || || || || || || | ||| || | || || |||| Sbjct 39247 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 39306 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | ||||| ||||| | || || || || ||||||||||| || ||||||||||| Sbjct 39307 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGG 39366 Query 33694 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGT 33753 | || ||||||||||| || || |||||||| | | ||| ||| || | ||| | Sbjct 39367 AGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACT 39426 Query 33754 CATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 || ||| ||| ||| | ||||| | || || || | || || || || ||||| Sbjct 39427 T-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCA 39485 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 || || | | || | |||||| | |||||| | || ||||| ||||| | Sbjct 39486 ATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAAC 39545 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 ||||| |||||| || || ||||| || || || || ||||| || || |||| ||| Sbjct 39546 GAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCT 39605 Query 33930 TCGGTAATCTGCACTTCTGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCAT 33987 || | || || || || | | ||| || | || | ||||||||| || || |||| Sbjct 39606 TCCGGGATTTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTAACAATCCCAT 39663 Query 33988 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTT 34047 ||||||||||||| || ||||| || ||||| ||||| | | | || | | || | Sbjct 39664 CACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATAT 39723 Query 34048 TATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCT 34107 || ||| ||||| || || | | ||| | |||||| | |||||||| ||||| Sbjct 39724 TAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCT 39783 Query 34108 CTGCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTAT 34167 |||| || |||||||| | ||| || ||| | ||| || || || | ||||| | | Sbjct 39784 CTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGT 39843 Query 34168 TTGGATTT 34175 | |||||| Sbjct 39844 TCGGATTT 39851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629723686323120