Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq3366 257 2e-63 >seq3366 Length=157547 Score = 257 bits (284), Expect = 2e-63 Identities = 523/760 (69%), Gaps = 25/760 (3%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| || || | ||||| Sbjct 38969 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 39028 Query 13646 AAAATCAAATGGATTT--ATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 | ||||| ||||| | | ||| | |||| | || || ||| | || ||| Sbjct 39029 CCAGTCAAAGGGATTAGAAGCGTGATATA-ACTTGCTGACG-CCAAGTGCATGTAACAAT 39086 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 | ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 39087 CGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCG 39146 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 || |||| | || || |||||||| ||| || || || || ||| ||| Sbjct 39147 ACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGATT 39203 Query 13824 GTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGCAA 13878 | | ||| | || ||| | | |||| |||| | || | ||| |||| Sbjct 39204 GCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAA 39261 Query 13879 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 13938 | |||||||| || || ||||| | ||| || || || |||||||| | ||| |||| Sbjct 39262 AGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCA 39321 Query 13939 TCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTCCC 13997 ||||||||||||| || | ||||||||| | |||| ||||| ||||| || || ||||| Sbjct 39322 TCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCT 39380 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATATCC 14055 || || || ||||| |||| | || |||| ||||||| || | ||| | ||| || Sbjct 39381 TCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CACC 39438 Query 14056 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATA 14115 |||| ||||||| | ||| || ||| | ||||||||||| || | || Sbjct 39439 ATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTA 39498 Query 14116 AATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 14175 ||| | || || | | | | |||||||||||||| | ||| ||||| ||| | Sbjct 39499 AATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCG 39558 Query 14176 AGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTA 14235 ||||||| ||||| || || || || || ||||||||||||| |||||||| ||| | Sbjct 39559 AGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAA 39618 Query 14236 CTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14294 | || | | |||| | ||| | |||||||||||| || |||||||| |||||||| Sbjct 39619 CCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAG 39677 Query 14295 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 || ||||| | || ||| ||||||| | ||| ||||||| Sbjct 39678 AAGGCCAACACGTGTTTGATAAAGTGT--CTC-TCATTGT 39714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479656466558600