Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq113 266 4e-66 seq3366 205 1e-47 >seq113 Length=12257 Score = 266 bits (294), Expect = 4e-66 Identities = 1040/1623 (64%), Gaps = 28/1623 (2%) Strand=Plus/Minus Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 |||| || ||||| ||||| | || ||||| || | || | ||| ||||||||| Sbjct 5234 AATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATGGAA 5175 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || | ||||| || || | ||||||||||| || || || |||| |||| Sbjct 5174 GACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTC 5115 Query 71561 TCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGA 71620 || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| |||| Sbjct 5114 GCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGA 5055 Query 71621 GATTTCTG---ACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCTCCCAT 71677 ||||| | || ||| | ||| || | || ||| ||| | |||| | | Sbjct 5054 GATTTTTCGTAACGATTTTTGTGATT---TCGTATAATTTTGCAAACTGAAATT--CTTT 5000 Query 71678 CTATTACAAACACGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 71735 || |||| | | || ||| || | || |||| ||| || || || || || || | Sbjct 4999 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 4940 Query 71736 ATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 71795 || | || | || |||||| ||| ||||| || | |||||||| | ||| || Sbjct 4939 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 4880 Query 71796 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAAT 71855 ||||| || ||||| || || || ||||| ||| |||| || || || ||||| Sbjct 4879 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 4820 Query 71856 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATATTCTT---GTATC 71911 |||| || | ||| || ||| | | | | | |||| | | |||| | Sbjct 4819 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTG--ACAGTCTTTCGGGCAA 4764 Query 71912 TCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTA 71971 | |||| ||||| | | |||||| || || ||| |||||| | | | | Sbjct 4763 TGTTTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 4704 Query 71972 ATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCA 72031 || ||| || |||||||| | || ||| ||| | || | || ||||||| Sbjct 4703 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 4644 Query 72032 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTC 72091 |||| ||||| || ||||||||||| ||||| ||||| | || ||| || |||| Sbjct 4643 TAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCATTTC 4584 Query 72092 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 72151 | |||||| || || || ||| | | ||||| | |||||| || || | || | Sbjct 4583 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 4524 Query 72152 TGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 72211 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 4523 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 4464 Query 72212 AAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTC 72271 | || | | |||||||| ||| ||||| || ||||| |||||| ||||| || Sbjct 4463 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 4404 Query 72272 CACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 72331 ||| ||||||||| ||| | || || || || ||| || || || | | Sbjct 4403 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 4344 Query 72332 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 72391 | ||| |||| | ||| || || ||||| || ||| |||||| |||| | ||||| Sbjct 4343 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 4284 Query 72392 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 72451 |||| || | |||| | ||| ||||||||||| || | || |||| || |||| Sbjct 4283 AACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 4224 Query 72452 TAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGAT 72511 |||| | |||| |||| | | ||||| || | | | | || | || | || | Sbjct 4223 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 4164 Query 72512 GTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTA 72571 |||| || || || || ||||||| |||||| || || | |||| | || ||| | Sbjct 4163 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 4104 Query 72572 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 72631 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 4103 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 4044 Query 72632 GTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 72691 || ||||| | |||||||| || || | | |||| || || ||| | Sbjct 4043 TATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCACA 3985 Query 72692 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATAA 72746 | ||| | |||| |||| | ||| ||| | ||| | || ||||| Sbjct 3984 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 3926 Query 72747 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 72806 | || |||||| || | ||| ||||| | || |||| ||| || | || || Sbjct 3925 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 3869 Query 72807 TCTGGCGGCTAGAATGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGC 72866 || || || | ||| |||| ||||||||||| | || ||||| ||||||| Sbjct 3868 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 3809 Query 72867 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 ||||| ||||||||| || || || || ||| | || || || ||| Sbjct 3808 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 3749 Query 72927 AGCTATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACG 72986 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 3748 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 3689 Query 72987 AGACGTGATTTTATCAAACATAACATTTTCCCGGCATCCATTTCGTTTAACGACAAACAT 73046 | |||||||| || || | || ||| | ||| | ||||| | |||| |||| Sbjct 3688 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 3629 Query 73047 TTT 73049 ||| Sbjct 3628 TTT 3626 Score = 86.0 bits (94), Expect = 8e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 70831 GTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 70890 || || |||| |||||| ||||| || ||||| ||||| |||| |||||||| Sbjct 5850 GTTCGGAGATGGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 5791 Query 70891 GTTAGTTTGGA-ATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGAT 70949 || ||||| | || | || ||||| ||||||||||| | || ||||| ||| || Sbjct 5790 GTGAGTTTACTGACAG-TCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 5732 Query 70950 GAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGT 71009 | | ||||| | || |||||||| | | |||| |||||| |||||||||| || Sbjct 5731 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 5672 Query 71010 TTTATA 71015 ||| || Sbjct 5671 TTTGTA 5666 >seq3366 Length=157547 Score = 205 bits (226), Expect = 1e-47 Identities = 419/612 (68%), Gaps = 17/612 (3%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 |||||| |||||| || || || || || || ||||| | ||| || | || || |||| Sbjct 39247 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 39306 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | ||||| ||||| | || || || || |||||||||||||| ||| |||||||| Sbjct 39307 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 39365 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || || ||||||||||| || ||||||||||| | | ||| ||| || | |||| | Sbjct 39366 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCA-TA 39424 Query 42236 TCATGTATC-CA-CTTTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 42291 || ||| || | ||| | ||||| | || || || | || || || || ||||| Sbjct 39425 CTTTGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 39484 Query 42292 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAG 42351 || || | | || | |||||| | |||||| | |||||||| ||||| | Sbjct 39485 AATCGCGCATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAA 39544 Query 42352 ACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGC 42411 ||||| ||| || || || ||||| || || || || ||||| || || |||| || Sbjct 39545 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGC 39604 Query 42412 CTCGGTAACCTGTACTT--CTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCG 42469 || | | || || | ||| ||| || | || | |||||| || || || || Sbjct 39605 TTCCGGGATTTGAACCTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCA 39662 Query 42470 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTC---GTCCGGTGTT 42526 |||||||||||||| || ||||| || ||||| ||||| | | | || |||| | | Sbjct 39663 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCC---GAT 39719 Query 42527 AATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGAT 42586 | ||| ||| ||||| || || | | ||| | ||||||| | |||||||| | Sbjct 39720 ATATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTT 39779 Query 42587 GCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAAT 42646 || ||||| || |||||||| | ||| || ||| | ||| || || || | ||||| Sbjct 39780 GCCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAG 39839 Query 42647 CTATTTGGATTT 42658 | || |||||| Sbjct 39840 CGGTTCGGATTT 39851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671039124756040