Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3366 217 1e-51 >seq3366 Length=157547 Score = 217 bits (240), Expect = 1e-51 Identities = 564/843 (67%), Gaps = 24/843 (3%) Strand=Plus/Plus Query 12865 ATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCAT 12924 |||||| | ||| | ||| |||||||||||||||||||||| | ||||| | ||||| Sbjct 38969 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATCATATCCAT 39028 Query 12925 AAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC--ACCCTAATTCTA-GTAACAA 12981 | || || ||||| ||| | ||| || | || | || | | ||||||| Sbjct 39029 CCAGTCAAAGGGATTA---GAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAA 39085 Query 12982 TCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTT 13041 || || || |||||||| ||||| || ||| ||| | |||||||| |||| | Sbjct 39086 TCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTC 39145 Query 13042 TACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTC 13101 || || | | ||| || ||| | || ||| || ||| || ||| || || | Sbjct 39146 GACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGC 39205 Query 13102 TCTTATTACGTTCTCTAATGGAGG---ATTTGATAGATGCTTAAACATCATACATGCAAA 13158 | | || | | || |||| | |||| || | | |||||| ||||||||| Sbjct 39206 A-TGAATA-GAGC-CTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 39262 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||| || | ||||||||| | ||| || ||||| |||||||| || || ||||| Sbjct 39263 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 39322 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA-AACGAACCCGaaaaaaaTATTCCTT 13277 | |||||||| || | ||||||||||| |||| || || || || ||||| ||||||| Sbjct 39323 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 39381 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATC-CAC 13336 | || || ||||| |||| || ||||| || ||| | |||| | ||| ||| Sbjct 39382 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACG----AGGCATACTTTGGATCGCAC 39437 Query 13337 --TTTC-TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAAT 13393 |||| ||||| | |||||| | ||||||| || |||| || ||| | | Sbjct 39438 CATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGT 39497 Query 13394 AAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCT 13453 |||| | |||||| | ||| || || ||||| |||||||| ||||| ||| Sbjct 39498 AAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCC 39557 Query 13454 GAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGA 13513 || || |||||||| || || |||||||| |||||||| |||| ||| || | | ||| Sbjct 39558 GAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGA 39617 Query 13514 ACTTCGGAG-TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaa 13572 || || | | |||| | || | ||||| ||||| ||||| ||||| || ||||| Sbjct 39618 ACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAA 39676 Query 13573 aaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCTGG 13632 || || | | ||| || ||||| | | | || || || || | || | ||| || Sbjct 39677 GAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTCATT 39736 Query 13633 AAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 | || | ||||| | || || |||||||||| || | || |||||||| Sbjct 39737 CATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATA 39796 Query 13693 CAT 13695 ||| Sbjct 39797 CAT 39799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430919741758458