Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq6751 163 7e-35 seq3366 123 6e-23 seq1823 118 2e-21 seq5220 89.7 1e-12 >seq6751 Length=68926 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || |||| || || || ||||||||||| || || || || Sbjct 5093 ATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCC 5034 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | ||||| | ||||||||||||||||||||||| || || || | || ||||||||| Sbjct 5033 GCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 4974 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||||||||| || |||||||| || |||||||| || | || || || || Sbjct 4973 GGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCA 4914 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| |||||||| ||||| ||||| |||||||| Sbjct 4913 ACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4864 Score = 156 bits (172), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | ||||| ||||||||||| || || || | || || | ||||| Sbjct 5760 AAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTC 5701 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||||||||| | || || || ||||| ||||||||||| || Sbjct 5700 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 5641 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||||| || ||| || || | |||||||| Sbjct 5640 CTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGT 5581 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || ||||| || |||||| Sbjct 5580 TTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5547 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| |||| || || || |||||||||||||| || || || Sbjct 5321 ATTCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCC 5262 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || |||| ||||||||||||||||||||||| || || || | || ||||||||| Sbjct 5261 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 5202 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || ||||| ||||| || || || || || | || || | || Sbjct 5201 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCG 5142 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || || | || || || || ||||| || || || ||||| || |||||| Sbjct 5141 ACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5091 Score = 134 bits (148), Expect = 3e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | || |||| ||||||||||||||| Sbjct 5522 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGT 5463 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | || ||||||||||| |||||||| || ||||| ||||| Sbjct 5462 TTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTC 5403 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || || | ||||| || | || ||||| || ||||| Sbjct 5402 GCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTTTTTCCAGTC 5343 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | ||||| ||||||||||||||| Sbjct 5342 AAGGTTTTCACAAATATCTGCATT 5319 >seq3366 Length=157547 Score = 123 bits (136), Expect = 6e-23 Identities = 291/434 (67%), Gaps = 13/434 (3%) Strand=Plus/Minus Query 268859 GCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAA 268918 || || ||||||| |||||||| || ||||| |||||||| | ||| ||| | Sbjct 39682 GCCTTCTTTGCAGCCAGTGATGGGATTGTTAATGAAAATCTCGCCATGAATTTCAGCAGT 39623 Query 268919 GAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATT 268978 ||||| || || || ||||| |||| ||||| |||||||| || || ||||||||||| Sbjct 39622 GAGGTTCAAATCCCGGAAGCTCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATA 39563 Query 268979 CATTCAGAGATGTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAA 269038 || || || |||| |||| || ||||| || || | ||| | ||| ||| Sbjct 39562 CACTCGGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACCGA----AAA 39507 Query 269039 AGACTATTTTCT----TCTATGAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGC 269094 | | |||| || | || ||| || || || | || ||| | ||||||| Sbjct 39506 ACAGCATTTACTATGCGCGATTGAAACAATCCCGTGCGTTACCAATAAAGCACAATGGGC 39447 Query 269095 TCTGAAATGG-ATAAACGATAGCGCGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 |||||||| | | | || |||| | | |||||| | || || ||||| || Sbjct 39446 GTTGAAATGGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGC 39387 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 || ||||| || || || || || || || | |||| |||||| |||||||| |||| Sbjct 39386 CGTCGAAGGAATCTTTTTCTCCGGATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGG 39327 Query 269212 CCTTATGCCAGGA-TTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACT 269270 | ||||| ||| || |||| || || || | || || | || ||||| |||| | Sbjct 39326 ATTGATGCCTGGACTTTGCTTT-TCAAATGAGCTCATCAGTCGTGATGAAGGACTACATT 39268 Query 269271 GCGACTTCGCTTGT 269284 | ||||| || ||| Sbjct 39267 GTGACTTTGCATGT 39254 >seq1823 Length=40296 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 10734 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 10793 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 10794 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 10851 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 10852 ACTTCGAGTGTAATTGTTTTTCC 10874 >seq5220 Length=101 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 ||||||||||||||||||||||| || || || | || ||||||||||| |||||||| Sbjct 98 CCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCC 39 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTC 104490 || ||||| ||||| || || || || || Sbjct 38 TTGTCCTGGATCTTCGCCTTCACGTTGTC 10 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151222419908732