Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq6751 127 2e-24 >seq6751 Length=68926 Score = 127 bits (140), Expect = 2e-24 Identities = 175/243 (72%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | ||| |||||||| || ||||| || || | Sbjct 5103 AAAAATTTGCATTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGAT 5044 Query 94828 GTTATAATCGCTCATAGT--GTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | ||| || | || || || |||||||| | ||||| | | | Sbjct 5043 GTTGTAATCCGCAAGAGTACGTCCG--TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGT 4986 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||||||||| | ||| || ||||| || ||| ||| Sbjct 4985 TGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTG 4926 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | |||||||| ||||||||||| ||||||||||| |||||| Sbjct 4925 TCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGC 4866 Query 95006 ATG 95008 ||| Sbjct 4865 ATG 4863 Score = 120 bits (132), Expect = 3e-22 Identities = 174/242 (72%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || ||| || | | || | |||||||||||| || ||||| || || | Sbjct 5559 AAAAATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGAT 5500 Query 94828 GTTATAATCGCTCATAGTGTTGGAA--TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| | || || ||| | || || || ||||| ||| | ||||| | | | Sbjct 5499 GTTGTAATC-CGCA-AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGT 5442 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 |||||||| |||||||| ||||| ||||| | || || ||||| ||| | | | |||| Sbjct 5441 TGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTG 5382 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | || || || | || || ||||||||||| | ||||||||||| |||||| Sbjct 5381 TCTGATGACTCTACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGC 5322 Query 95006 AT 95007 || Sbjct 5321 AT 5320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| ||||| ||| |||| |||| | |||||| ||||||||||| ||||||||| Sbjct 5702 TCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTG 5643 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | ||| ||| || | || || || | ||| || Sbjct 5642 TCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATA 5583 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| ||||| || || || ||||| || ||||| Sbjct 5582 GTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 5548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448224354178440