Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3366 246 3e-60 >seq3366 Length=157547 Score = 246 bits (272), Expect = 3e-60 Identities = 647/966 (67%), Gaps = 31/966 (3%) Strand=Plus/Plus Query 92741 ATTAGAAATCTGCATCTAGTGTAAATACATTGTCAAGTGGATTCTTATTCAT-AACACCA 92799 |||||||||||||||||| || || || | || || | | || ||||||| Sbjct 38905 ATTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCTTTGCAG----AGACACCAACACCA 38960 Query 92800 CATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATC 92859 |||| ||||| ||||| ||| ||||| || ||||| ||||||| || ||| ||| Sbjct 38961 GATTTCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAATC 39020 Query 92860 GAATTCA-CTAGTGATTGG-ATTCTTGGCGTTATAATACTTTTCACCGATCAACT-CGTA 92916 || || | ||| | || ||| |||| ||| |||| || ||| | | | Sbjct 39021 ATATCCATCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGC-CAAGTGCATG 39079 Query 92917 CAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG 92976 || |||| ||| || ||||| || ||||| ||| ||||||| |||||||||| | Sbjct 39080 TAACAATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAAT 39139 Query 92977 AAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAA 93036 || || || || | || | || |||| ||||| | |||||| || | Sbjct 39140 TAGCTCGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAAT 39199 Query 93037 GATTTCTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG 93095 |||| | || | | | || ||| | || | ||| | | |||||| | || | Sbjct 39200 GATTGC-ATGAATAGAGCCTTCTGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATG 39258 Query 93096 CAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA--CC 93153 ||||||| ||||| ||||| || || || | |||||| |||| ||| || Sbjct 39259 CAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGAAAAGCAAAGTCC 39316 Query 93154 TGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTA-CCAGaaaaaaaTA 93212 || | || |||||||||||| ||||||||||| || ||| || | || || ||||| | Sbjct 39317 AGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGA 39375 Query 93213 TACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGA 93272 | ||||| ||||| ||||| || || | | ||| ||||| | || || ||| || Sbjct 39376 TTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAAC---GAGGCAT-ACTTTGGA 39431 Query 93273 TC----CATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 || ||||| || ||||| | ||||| || ||| || || | |||||| || ||| Sbjct 39432 TCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCG 39491 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | || | | | ||| | |||| ||||||||||| || || | |||||| Sbjct 39492 CATAGTAAATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATAC 39551 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | ||| || || | ||| || ||||||||||||||||| || || |||| |||||||| | Sbjct 39552 ACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGG 39611 Query 93449 ATCTGCACTTC-TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGC 93507 || || || || || |||| || ||||||||||||| || || ||||| || Sbjct 39612 ATTTGAACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTAACAATCCCATCACTGGC 39670 Query 93508 TGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCA 93567 |||||| || ||||| | || || ||||| ||| |||||| || | ||| ||| Sbjct 39671 TGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCA 39730 Query 93568 ATCGGATAGATCTTTTGAA--AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || || || | || | | ||||| |||||| | |||||||| ||| |||||| Sbjct 39731 GTC--ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCT 39788 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGG 93685 || || ||||| ||||| || || | ||| || ||||||| |||||| || || || Sbjct 39789 TTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGA 39848 Query 93686 TTATCT 93691 || ||| Sbjct 39849 TTTTCT 39854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556777765093960