Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq343 122 7e-23 seq6751 107 2e-18 seq113 84.2 2e-11 >seq343 Length=30199 Score = 122 bits (134), Expect = 7e-23 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 12802 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 12743 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 12742 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 12683 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 12682 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 12623 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 12622 ATCCAAAAAG 12613 >seq6751 Length=68926 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | || | ||||||||| | | Sbjct 5548 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 5607 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || || ||||| || || ||||| || || || Sbjct 5608 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 5667 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| | || || ||||| | | ||||||||| Sbjct 5668 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 5727 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 5728 ATTCAGAAAGAGTCTAC 5744 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | ||| | ||||| || | | Sbjct 5092 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCG 5151 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 5152 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 5211 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 5212 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 5271 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| |||||||| || | || ||||| Sbjct 5272 ATTCAGAAAGAATCAACGTTGCACTTAGT 5300 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| ||||| | || || || || ||||| | ||||| || | | Sbjct 4864 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4923 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||||||||| || || ||||| || ||||| Sbjct 4924 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4983 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || ||||| |||| || || || | | ||||||||| Sbjct 4984 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 5043 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || || |||||||| || | || ||||| Sbjct 5044 ATCCAGAAAGAATCAACGTTGCACTTAGT 5072 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| | ||| | ||||| || | | Sbjct 5320 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATCA 5379 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 5380 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 5439 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| |||| || || || | | ||||||||| Sbjct 5440 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 5499 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 5500 ATCCAGAAAGAATCAAC 5516 >seq113 Length=12257 Score = 84.2 bits (92), Expect = 2e-11 Identities = 243/367 (66%), Gaps = 14/367 (4%) Strand=Plus/Minus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||| | ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 5758 AATATTTAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 5699 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 5698 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGAAGGAAT 5642 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 5641 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 5584 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 5583 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 5524 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 5523 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 5464 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 5463 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 5406 Query 129263 AACCGTG 129269 ||||| Sbjct 5405 TTCCGTG 5399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419666977975885