Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6751 176 8e-39 seq343 165 2e-35 seq277 141 2e-28 seq1823 105 1e-17 seq6566 91.5 3e-13 seq957 89.7 9e-13 >seq6751 Length=68926 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | |||||||| | ||| || ||||| |||||||| ||||| | Sbjct 5548 TTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCG 5489 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||||| || || |||||||| || || | ||| || || || | Sbjct 5488 CAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAG 5429 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||| ||||| ||| || || ||||||| ||| |||| Sbjct 5428 GAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTA 5369 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||| || || |||||||| || | ||| || || |||||||||||| Sbjct 5368 CTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 5319 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || ||||| || | || ||||| | ||| || ||||| |||||||| ||||| | Sbjct 5092 TTCCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCG 5033 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||||| || || || ||||| || || | ||| || || || | Sbjct 5032 CAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAG 4973 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||| |||||||||||||| ||||| || ||||| ||||||| || || | Sbjct 4972 GAATTCCTTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAA 4913 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| |||||||| ||||| || || || || || || |||||||| Sbjct 4912 CTTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4864 Score = 149 bits (164), Expect = 1e-30 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || ||||| | || ||||| | ||| || ||||| || ||||| ||||| | Sbjct 5320 TTCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCG 5261 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 || || | || ||||||| || || || ||||| || || | ||| || || || | Sbjct 5260 CAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAG 5201 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||| ||||| ||| || || ||||| | ||| || | Sbjct 5200 GAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGA 5141 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||||||| || |||||||| || || || ||||| || || || |||||| Sbjct 5140 CTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5091 >seq343 Length=30199 Score = 165 bits (182), Expect = 2e-35 Identities = 151/191 (79%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 68272 CTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATA 68331 ||||||||||||| ||||| | ||| || | || || || || || || || ||||| | Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 12672 Query 68332 TGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCT 68391 | | | ||||||||||| ||||| |||||||||||||||||||| ||||| || | Sbjct 12673 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 12732 Query 68392 CGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 |||||||||| | |||||| || || | ||||| ||||| || ||||| |||||||||| Sbjct 12733 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 12792 Query 68452 ATATCTGCATT 68462 | ||||||||| Sbjct 12793 AAATCTGCATT 12803 >seq277 Length=126701 Score = 141 bits (156), Expect = 2e-28 Identities = 257/371 (69%), Gaps = 4/371 (1%) Strand=Plus/Plus Query 268223 ACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGC 268282 ||||| || | || ||| | ||| | |||| ||||||| |||||||||||| | Sbjct 80654 ACAAAATCTTGAGGATCATTATGCTGCATCATTCTCCACATACATTCGACATAGTCTCTT 80713 Query 268283 GCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCG 268342 ||||| ||||| || || || || |||| || || || | ||||| | || | || Sbjct 80714 GCATGACCCCAGTCTCGTTTAGCATCCAAATTTCCAAGATATAGGCAATCTTGATACCCT 80773 Query 268343 AGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGA 268402 || | |||| ||| |||| || || || || ||||||||||| || || | Sbjct 80774 TCATTGATGCGTACAACCGCGCGGGTAATCTTGCGAGTCACGAACGTTAGCCCCCGGCGT 80833 Query 268403 GGGCTCTCGTGGTTGAAGAGGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTA 268461 || |||||||| || || | ||| || || ||| || || || |||||| || | ||| Sbjct 80834 GGACTCTCGTGATTAAATAAGATTCCATT-CACTGCAAATATTTTATATGCTTCTCTGTA 80892 Query 268462 GTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAA 268521 || ||||||| ||| |||||||| ||||||||| |||||||||| || || | || Sbjct 80893 ATTAACGACCGACCAATATGCAAATTGCTTTGCAACACCGTACGGAGATCGCGGGTAAAA 80952 Query 268522 GGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGAGGTCGATG 268580 |||| || || ||||| || ||||||| | || || ||||||| || || | Sbjct 80953 AACCGTC-TGTTCATTTTGTGGCGTTTCTCGAGCGTTCCCGTAGAGCTCACTCGTGGAAG 81011 Query 268581 CTTGGTAGAAC 268591 |||| || ||| Sbjct 81012 CTTGATAAAAC 81022 >seq1823 Length=40296 Score = 105 bits (116), Expect = 1e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 || ||||| | || || ||||| || || || | ||||||||| || ||||| |||||| Sbjct 10744 CCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCC 10803 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 |||||||||||||| |||||| || || ||||| |||||||||||||| | || Sbjct 10804 TTGTCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTA 10863 Query 68424 ATGGTTTTTCC 68434 || |||||||| Sbjct 10864 ATTGTTTTTCC 10874 >seq6566 Length=60915 Score = 91.5 bits (100), Expect = 3e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 176268 TCCTTGCCTCCGTGAAGGCGGGAACCGAATTGTCCGCGAGGAAGAAGCAAATTGATGTTA 176327 || || || || |||||||||| |||||||| || |||| |||| |||||||||| Sbjct 7738 TCTTTTCCACCTTGAAGGCGGGTTCCGAATTGACCTGAAGGATACAGCATATTGATGTTA 7679 Query 176328 TTCGAACCCACGTAGTCTTGGGCCATTCCGACTATGGCGCCCTGGAGAGACGCCTCGCCG 176387 || ||||| || ||||| || ||||| || || | || || || ||||| || Sbjct 7678 TTGGAACCAACATAGTCCTGCGCCATGTTAACAATAGTAGAGTGCAGCGATGCCTCACCA 7619 Query 176388 TGGTGATAGCCGGCGTTCTCACTTGTGTATCCGGCAAACTGCGCGACTTTGATTTCTTGT 176447 || ||||| | | | |||||| |||||||| | ||| || ||||| ||||| ||| Sbjct 7618 TGATGATACGCTGTATGCTCACTACAATATCCGGCCAGCTGTGCTACTTTCATTTCCTGT 7559 >seq957 Length=34123 Score = 89.7 bits (98), Expect = 9e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||||||||| || ||||| || || || || || || Sbjct 26767 ATACCTTCCTTGTCTTGAATCTTTGCCTTCACATTATCGATCGTATCAGCCGACTCCACG 26708 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || || || | |||||||| || |||||||| Sbjct 26707 TCCAATGTGATCGTCTTCCCGGTTAAAGTCTTGACAAAAATCTGCAT 26661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921484974579880