Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq113 116 3e-21 seq343 109 5e-19 seq6751 107 2e-18 >seq113 Length=12257 Score = 116 bits (128), Expect = 3e-21 Identities = 603/938 (64%), Gaps = 27/938 (3%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAG-AG 123664 || |||||||||||||| ||||| ||||||||||| || || | ||| |||||||| || Sbjct 4823 GAGACCGGAACGCCGTATATGCTTTACAAAGACGCTTGTAATCGTAAATCCAATCAGCAG 4882 Query 123665 CAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGC 123724 | ||| ||||| || || || ||||| |||| ||||| ||||| ||| || | Sbjct 4883 AATCTT-GGAACCATTCGATCAAGCAATCTCTGCTGTGAAATCATCGAGTACTCAGACTC 4941 Query 123725 CGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC---GTGAATCGTTGCGTCGAAAA 123781 | | ||||||| || || ||||||||||| | | || || || ||| || | | Sbjct 4942 CAAAGAAGTGGCAGTATGCAATTTGGCTTCCA-TCGCATTGTCAAAATTTGTGTATCAGA 5000 Query 123782 CGGCGCTTTTAATTTCCAAACGCTCAAACG-CATAACAAAAACTGTAGTAAAGAATTTGA 123840 | ||| | ||| |||| | | ||| || ||||||| || || ||| | | Sbjct 5001 AAG-AATTTCAGTTTGCAAA--ATTATACGAAATCACAAAAATCGTTACGAAAAATCTCA 5057 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 ||||||| || ||| | |||| |||||| | ||||| | || ||| | || Sbjct 5058 ACAAAATCATTGATCTCAATTATTATCCGATTCCTGAAGCACAAGTGAGCAATCAGCGAC 5117 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 | ||||| | ||| | ||| ||||||| | ||||| ||||| || || || | | | Sbjct 5118 ATCGACCGATTGGAATCGGCGTTCAAGGTCTTGCCGATACGTTTTTACTGATGAGTCTTC 5177 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | | |||||| | | || ||| || | |||| ||||| || |||| || Sbjct 5178 CATTTGAAAGCAAAGCTGCTCGCGAGCTCAACAAAGAAATTTTTGAAACGATGTATTTCG 5237 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTG--CGAAAATTCACGGCGCGTACGAAAGTTACGC 124078 || |||| || | ||| | | || || | ||| ||||||| || || || Sbjct 5238 CGGCGATGGAAGCTTCCATGGAATTGGCACGGGAA--CTCGGACCGTACGAGAGCTATGC 5295 Query 124079 GGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATG-CTACACCGA--C 124135 || || | || |||||||| || || | || |||||| | | | |||| | Sbjct 5296 TGGATCACCAGTTAGTCGAGGTATCTTTCAATTTGATATGTGGCAGGTCATTCCCGATTC 5355 Query 124136 AAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTC 124195 | ||||| |||| || ||| | | || | || ||||| | || ||||| Sbjct 5356 CGGTCGATGGGATTGGAAGCAGTTGAAAGAGCAAGTAGCTACTCACGGAATCCGAAACTC 5415 Query 124196 GCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATC 124255 || || | || ||||| || || | || ||||||||| | || || ||| || Sbjct 5416 TTTGCTGCTCGCTCCGATGCCAACCGCCTCAACGGCTCAAATTCTCGGCAATTGCGAGTC 5475 Query 124256 CTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCG-ATTTTCAAG 124314 |||||||||||||| ||| ||| | ||||| || | || || | |||| ||| Sbjct 5476 TATCGAGCCGTTCACTTCCAACATGTTCAATCGACGCGTCCTCGCTGGAGAATTTACAAT 5535 Query 124315 TGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGT--ACGATGAAAACAT 124372 || | || | || | |||| || | | | | | ||||||| || || | || | Sbjct 5536 TG-TCAACAAATATCTCATGGAAGAGCTTATTGAGATGAATTTGTGGAC-AT-CAGACGT 5592 Query 124373 GCGCAACGAAATTATT-GCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAAC 124431 || || |||| || ||| | | || ||| || |||||| ||||| | Sbjct 5593 TCGGAATCAAATCCTTCGCGATC-GCGGTTCCGTACAAAATATCGCTGAAATTCCTTCTC 5651 Query 124432 ACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAA-AAATAAACGATTAATTGAAATG 124490 | || || || ||||||||| || |||||||| || || | ||||| | || ||| Sbjct 5652 ATGTGAAAGAAAAGTACAAAACAGTTTGGGAAATCAAGCAAAAGGCGATT-TTGGACATG 5710 Query 124491 GCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATC 124528 || | ||| ||||| ||||||| ||| |||||||| Sbjct 5711 GCTGCCGATCGAGGAGCGTACATTTGTCAGAGTCAATC 5748 >seq343 Length=30199 Score = 109 bits (120), Expect = 5e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 45153 TTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATC 45212 |||||||| || ||||| || ||| || |||||||||||||||||| | ||| Sbjct 12615 TTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAATC 12674 Query 45213 AATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCT 45272 || || || ||||| || ||||| ||||| || |||||||| || || | || Sbjct 12675 AAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTATCG 12734 Query 45273 ACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAA 45332 | ||||||||| || ||||| || ||||| | ||||| ||||| || || || || ||| Sbjct 12735 ATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGAAA 12794 Query 45333 ATTTGCAT 45340 || ||||| Sbjct 12795 ATCTGCAT 12802 >seq6751 Length=68926 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | ||||| |||| ||||||||| || || || || ||||| Sbjct 5321 ATTCCACCACGGAGGCGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCC 5262 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | ||||||||| ||| | |||| |||||||| || || Sbjct 5261 GCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGA 5202 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || || | || | || | ||||| || ||||| Sbjct 5201 GGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCA-CGTTGTCAATAGTGTCCGATGACTC 5143 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||| | ||||| || || || || || |||||||||||||| Sbjct 5142 GACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451935800672840