Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq3366 143 3e-29 seq343 104 2e-17 seq6751 89.7 5e-13 >seq3366 Length=157547 Score = 143 bits (158), Expect = 3e-29 Identities = 406/616 (66%), Gaps = 12/616 (2%) Strand=Plus/Plus Query 132887 ACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGA 132946 |||||| || |||||||| ||||| | || || || | ||||| || || ||| Sbjct 39247 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATT--TGA 39304 Query 132947 AAGTCAAG--CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCC 133004 || ||| || ||||| | || ||||| || ||||||||||| | | ||| || Sbjct 39305 AAAGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCC 39364 Query 133005 CGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTT- 133063 || || |||| || ||||||||||| || || |||| | || | |||| ||| | Sbjct 39365 GGAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATA 39424 Query 133064 CTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTT 133123 ||||| || ||| || |||||||| || || | | |||||||| || |||| Sbjct 39425 CTTTGGAT-CGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTT 39483 Query 133124 CGATGGCGTTCAACAAACGGAGTTTCTCTTCCGA-GGAACGC--ACGTAGGTGTCGATGA 133180 | || ||| | ||| | |||| ||| | ||| | | ||| || || || | Sbjct 39484 CAATCGCGCATAGTAAATGCTGTTT---TTCGGTTGGATCTTTGATGTATGTATCAATCA 39540 Query 133181 GGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACC 133240 |||||||| ||||||||||| || || || || ||||| || || |||||||| | Sbjct 39541 ATAACGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATC 39600 Query 133241 GCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGC 133300 | || || | || || || |||| | | | |||||||| || || || | Sbjct 39601 GAGCTTCCGGGATTTGAACCTCACTGCTGAAATTCATGGCGAGATTTTCATTAACAATCC 39660 Query 133301 CGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCA 133360 | || ||||| || || ||||||| |||||| ||||| || || | ||| ||||| | Sbjct 39661 CATCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATA 39720 Query 133361 AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACG 133420 |||||| | |||| | || || | || || |||||||||| | Sbjct 39721 TATTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTG 39780 Query 133421 CCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACC 133480 |||| ||||| || ||||| ||| || || || | |||||| ||||| | ||||| | Sbjct 39781 CCTCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGC 39840 Query 133481 GGCGGGGGTTTTCGCG 133496 || || ||||| || Sbjct 39841 GGTTCGGATTTTCTCG 39856 >seq343 Length=30199 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || |||||| || ||||| || || ||||| || ||||| ||||| | || ||||| | Sbjct 12806 AAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATC 12747 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | | || | || || | ||||| || |||||||| |||| Sbjct 12746 ATCCGACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGA 12687 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||||||| | |||| ||| || ||||| |||| |||| || || ||| || || Sbjct 12686 CCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTA 12627 Query 38420 CAACATCCAAAA 38431 |||||||||||| Sbjct 12626 CAACATCCAAAA 12615 >seq6751 Length=68926 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| ||||| || ||||| | || || ||||| || || | || || ||| | | Sbjct 5319 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 5378 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | |||| | || | || |||| ||||| || |||||||| | || | Sbjct 5379 AGACACTATTGACAACG-TGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATC 5437 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || || || || | ||| || ||||| || || |||| || || || || |||| Sbjct 5438 AGCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACA 5497 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| || ||| | ||| |||| |||||||| ||| Sbjct 5498 ACATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGT 5535 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || |||||||| || || || |||||||| | || || ||| | | Sbjct 4864 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4923 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | |||||||| |||||||| | || || Sbjct 4924 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4983 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || || || || | ||| || ||||| || || |||| || || || || |||||| Sbjct 4984 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 5043 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | ||| |||| || ||||| ||| Sbjct 5044 ATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGT 5079 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500098217983360