Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3366 302 5e-77 seq113 188 8e-43 >seq3366 Length=157547 Score = 302 bits (334), Expect = 5e-77 Identities = 623/911 (68%), Gaps = 22/911 (2%) Strand=Plus/Plus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCA 18733 |||||| |||| | ||| ||||| || || |||||||| | | || || ||| |||| Sbjct 38969 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGAAAT-CATATCCA 39027 Query 18734 TAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTC 18793 | | ||||| ||||| | | ||||| || ||| || | | | || | || Sbjct 39028 TCCAGTCAAAGGGATTAGAAGCGTGATATAACTTGCTGACGCCAAGTGCATGTAACAATC 39087 Query 18794 TATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 |||||| ||||| | || ||| ||||| | |||||||||| |||| | | Sbjct 39088 GATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGA 39147 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || |||| |||| | |||||||||||| || | || || || || || || | Sbjct 39148 CTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCAT 39207 Query 18914 CAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAA--ACATCAAACATGCAAAATC 18971 || |||| | | || ||| | | || | |||||| ||||||||| || Sbjct 39208 GAATAGAGCCTTC--TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAGTC 39265 Query 18972 ACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAG 19031 |||||||||||| || || | ||| || | ||||| ||||| | |||||||||| Sbjct 39266 ACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAA 39325 Query 19032 TCCTCttttttttAACCAGAATATAGAAGCA-AATGATCCAGAAAAGAATATACCTTCTA 19090 ||||| ||| || | ||| |||||||| ||| |||||||| || || || || ||||| | Sbjct 39326 TCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCCTTCGA 39384 Query 19091 CTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAG-CATCATTATTATGAATCCATTTC 19149 | || ||||| || || | ||||||| || ||| || ||| || || ||||||| Sbjct 39385 CGGCCGCAAAGGCTACCACTCTTTCTGCA-AACGAGGCATACTTTGGATCGCACCATTTC 39443 Query 19150 AGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATAC 19209 | ||||| | || || || | || || || ||||| || || | |||| || Sbjct 39444 AACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGC---ATAG-TAA 39499 Query 19210 ATAC-GCTCATCTGT---ATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 || | | | || || |||||| | |||| ||| |||||||| |||| ||| || Sbjct 39500 ATGCTGTTTTTCGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGA 39559 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 || ||||||||||| || || || ||||| ||||| |||| ||||| | || || || Sbjct 39560 GTGTATATTTTCTATTGCAATTTGGAATCCATAAAAGCATCGAGCTTCCGGGATTTGAAC 39619 Query 19326 TTCACTAC--AAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 ||||| | ||| || | | | | |||||||||||| || |||||||| |||||||| Sbjct 39620 CTCACTGCTGAAATTCAT--GGCGAGATTTTCATTAACAATCCCATCACTGGCTGCAAAG 39677 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTA 19443 || || || || ||||| ||||| ||| | |||| | || || ||| ||||| Sbjct 39678 AAGGCCAACACGTGTTTGATAAAGTGTCTCTCATTGTCCGATATATTAAGCCAGTCATTC 39737 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 || || | ||||| | |||||| | |||||||| ||||||||||| |||||| Sbjct 39738 ATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATAC 39797 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 |||| ||| || ||| | |||||| ||||||| ||||| | || ||||||| Sbjct 39798 ATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGG 39857 Query 19564 AGAATAGGTTC 19574 |||| |||||| Sbjct 39858 AGAAAAGGTTC 39868 >seq113 Length=12257 Score = 188 bits (208), Expect = 8e-43 Identities = 419/626 (67%), Gaps = 2/626 (0%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| || ||||||||||| ||||||||| | | || | ||||| Sbjct 4646 TCATAAACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGTTCAT 4587 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | ||| |||| | ||||| ||||| || | ||||| |||||||| || |||| || Sbjct 4586 TTCCATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGAT 4527 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | ||||| | ||| || || ||| |||||||| | |||| || || | | Sbjct 4526 AAATTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCAT 4467 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 | | || | | |||||| ||||| ||||| || | ||||| || || |||||||| Sbjct 4466 TGAACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAAC 4407 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 | | | | ||||| ||| | || ||||| || ||| || || || Sbjct 4406 TGTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATAC 4347 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 ||||| |||| || || || ||||| || || ||| ||||||| ||| ||||| Sbjct 4346 ACGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATA 4287 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 ||||||| || | ||| || || ||||| | ||| || | || |||| ||||| Sbjct 4286 GAAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCAT 4227 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 | |||| | || | ||| | || ||| ||||| | ||| | ||| | || | || Sbjct 4226 GCGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTT 4167 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCA-ACAATTTTGTTA 48749 ||||| || | || || ||||||| ||||| ||| || | |||| ||| |||| | Sbjct 4166 TGTGTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCA 4108 Query 48750 TTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAG 48809 || | ||| ||||| ||||| |||| |||||||| |||||||||| ||| |||| Sbjct 4107 TTCACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAG 4048 Query 48810 TCGTTATCATTAATAATTGATGAATT 48835 || ||||| ||||| | ||||| Sbjct 4047 TCTCTATCACCGATAATGGCGGAATT 4022 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 47012 TGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCATACT 47071 |||||| | || ||||| || ||||| | |||| ||||| | ||||||||||| Sbjct 5851 TGTTCGGAGATGGTACATTCCTGTCTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGA 5792 Query 47072 AGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAGATTGACTCTGATCAAT 47131 ||| | |||| | | || || | ||| |||||||| || |||||||||||| ||| Sbjct 5791 AGTGAGTTTACTGACAGTCGGGTCGGCAATGTGAATATTTAGTGATTGACTCTGACAAAT 5732 Query 47132 AAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCATACTGT 47191 | || |||| ||| || ||||| || ||||| || |||| || ||||| ||||| Sbjct 5731 GTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTGT 5672 Query 47192 TTTATAAATTTGTTT 47206 ||| || ||| ||| Sbjct 5671 TTTGTACTTTTCTTT 5657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562024982551560