Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq6751 131 3e-25 seq343 96.9 6e-15 seq1823 89.7 9e-13 >seq6751 Length=68926 Score = 131 bits (144), Expect = 3e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193132 TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGG 193191 ||||||| | | |||||||||||||| | |||| |||||| ||| || || || | Sbjct 5776 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 5717 Query 193192 ATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAG 193251 | ||| | || || | |||||| ||||||||||||| | || || || |||| Sbjct 5716 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 5657 Query 193252 GTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAA 193311 | ||||||||||| || || || || | || | ||| |||||||| ||||| || | Sbjct 5656 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 5597 Query 193312 CTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 |||| | || |||||||| || || ||||| || ||||| ||||||||| Sbjct 5596 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5547 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||||||| || || || | | || ||||||||||| ||||||||||| Sbjct 5018 TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTG 4959 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| |||| ||| || || || |||||||||||||| | ||| || Sbjct 4958 TCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATG 4899 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || |||||||| ||||| || ||||| Sbjct 4898 GTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCAT 4864 Score = 111 bits (122), Expect = 3e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 ||||| || | ||||| || | ||||| ||| || || || | | ||||| Sbjct 5306 CGAAGCACTAAGTGCAACGTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCG 5247 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||||||| || || || | | || ||||||||||| |||||||| || Sbjct 5246 TCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTG 5187 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | || |||||| || || ||||| ||||| | |||||| Sbjct 5186 TCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATG 5127 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || ||||| || ||||| ||||||||| Sbjct 5126 GTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5091 Score = 109 bits (120), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || ||||| | | || || |||| ||||| || | ||||| || || Sbjct 5556 AATTTGCATTCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTT 5497 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | | ||||| || |||| |||||| ||||| || || | | || || Sbjct 5496 GTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTG 5437 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| |||||||| || || || || || | || | || |||||| || || Sbjct 5436 ATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGA 5377 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| ||||| | |||||||||||| || || | ||||| |||||||| |||||| Sbjct 5376 TGACTCTACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 5319 >seq343 Length=30199 Score = 96.9 bits (106), Expect = 6e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || ||||||||||| || ||||| || | |||||| || ||||| |||||||| || Sbjct 12648 TCCTCCAATTGTTTTCCTGCGAAAATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTG 12707 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | ||| || || ||||| || || || || ||||| || Sbjct 12708 TCTTGAATCTTCGCCTTCACATTATCGATGGTGTCGGATGATTCGACCTCAAGAGTGATT 12767 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||| || || || || || || || || |||||| Sbjct 12768 GTTTTCCCGGTGAGTGTCTTGACGAAAATCTGCATT 12803 >seq1823 Length=40296 Score = 89.7 bits (98), Expect = 9e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||||||||||| | ||||| |||||||| |||||||| || Sbjct 10747 TCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGGAATTCCTTCCTTG 10806 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || ||| | || | ||| ||| || || | || || ||||| || || || Sbjct 10807 TCTTGAATCTTGCTCTTGACATTGTCAATCGTGTCCGCTGATTCTACTTCGAGTGTAATT 10866 Query 193326 GTTTTACCTGTT 193337 ||||| ||| || Sbjct 10867 GTTTTTCCTATT 10878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899520250283280