Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq113 188 2e-42 seq1895 93.3 1e-13 seq572 91.5 4e-13 seq693 84.2 6e-11 >seq113 Length=12257 Score = 188 bits (208), Expect = 2e-42 Identities = 648/997 (65%), Gaps = 44/997 (4%) Strand=Plus/Minus Query 155397 aaaaaTGTGTCGGCTAAACCCTGAACTCCAATACCGACTGGGCGATGCCTGTAATTGCTC 155456 ||||| || ||||| | ||| ||||| || || || | || ||||| | | ||||||| Sbjct 5163 AAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGATGTCGCTGATTGCTC 5104 Query 155457 CTGCTTGT-CTTCTTGTTTGGG-TAAAAATTCACATCAATAATGTTATTTAAATTT---G 155511 ||||| |||| | | || ||| |||| | |||||| || || || | |||| | Sbjct 5103 A--CTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGTTGAGATTTTTCG 5046 Query 155512 TAACCAATACCTTGGTTACGTCTGCTAATTTCACATAGTCAAATGTTTTATCCTCATTTA 155571 |||| | | || || ||| | ||||| || | | |||| ||| || || | Sbjct 5045 TAACGATTTTTGTGATTTCGTAT---AATTTTGCAAACTGAAATTCTTT---CTGATACA 4992 Query 155572 CAAACAT--ACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCT 155629 |||| | || | | | || || |||| ||| ||||| || || ||| ||| Sbjct 4991 CAAATTTTGACAATG--CGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGAGTCTGA 4934 Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGAT-----GGTGCCTAAATTCTTC 155684 ||| || | || |||||||| || || |||||| ||| || | ||||| | Sbjct 4933 GTACTCGATGATTTCACAGCAGAGATTG-----CTTGATCGAATGGTTCCAAGATTCTGC 4879 Query 155685 TGGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATC 155744 || || ||||||| |||||||| || ||||| || || || || ||||| ||||| ||| Sbjct 4878 TGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAATC 4819 Query 155745 TGTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCT 155804 || |||| ||| | ||| | | |||| || | ||| | || | Sbjct 4818 TGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTTT 4759 Query 155805 TCCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTC 155862 | ||||| || ||||||||| || | | | || || | | ||| |||| Sbjct 4758 TGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTC--TCATAAAGTC 4701 Query 155863 CAGGGCACTTATCGGGGCAAAACAGCGACCAAATTTTATTACCGATTACACGCTCCATAA 155922 || || | || || || | ||| || || | ||||| | ||||| Sbjct 4700 GTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAA 4641 Query 155923 ATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCT--TTGACTCCTCATCGCC 155980 | | ||| ||||| |||||| || | || | ||| | || | |||| || Sbjct 4640 ACAGATCGGGGATCCAAAGAGCATAAAATAAATCTCGTGCTCGATGGAGT--TCATTTCC 4583 Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040 |||||||| ||||| || | || || ||||| | ||| ||||| ||||| || Sbjct 4582 ATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAAT 4523 Query 156041 AGCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAA 156097 |||||| || |||| ||| ||||| ||||| || || ||||| || | |||||| Sbjct 4522 TGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAA 4463 Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACC 156157 || | ||||| |||| ||| ||||| ||| | ||||| || |||||||||| ||| Sbjct 4462 CACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATAT---AACT 4406 Query 156158 A---GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTG 156214 | ||||||| ||| |||| | |||||||| || | ||| || ||||| Sbjct 4405 GTTGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACA 4346 Query 156215 AGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAG 156274 || |||| || | || | | |||| || || ||||||||||||| ||| |||| ||| Sbjct 4345 CGCACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAG 4286 Query 156275 ATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATG 156334 | | ||||| |||||| ||||| || ||||| || ||||| || || || |||||||| Sbjct 4285 AAAACACGACGATAATTGGGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATG 4226 Query 156335 AATAAAATACTTATTAGACATATAATCGTATGTCTCC 156371 |||| |||| | ||||| | || || || ||| Sbjct 4225 CGTAAAGAACTTTTGTGACATGTGTTCATACGTTTCC 4189 >seq1895 Length=37553 Score = 93.3 bits (102), Expect = 1e-13 Identities = 177/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGA-TGCGTCATATAG 251462 || |||| ||||| ||| ||| || || |||| ||| ||||| || | || || ||| Sbjct 17154 GCAATAATTCCACAGATATCACAAACGTGAACGCGGTACGCATCCGAATTCG-CAAATAA 17096 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| || | ||| | || ||||||||||||| |||||| |||||||||||||| Sbjct 17095 TCGATCCATAAGGAAATTCGCTGATCCGTGTGAAATCAAACAATCTCGCTCCATTTCACC 17036 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 | ||| | || || || || || || ||||| || || || || || | || Sbjct 17035 CATACGTAACCCTCCTTCCCGGGCTCTTCCCTCCATCGGTTGTCGCGTTAGCATTGTCAC 16976 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 |||||| || || ||| ||||||| |||||||| || | ||||| ||||| Sbjct 16975 TGGACCGCGAGACCGCGAGTGTATTTTATCATCAACCATATGTTTTAACCGCTGATAGAA 16916 Query 251643 TGCGGGACCGATGAAGAT 251660 || || || ||||| || Sbjct 16915 TGTCGGTCCAATGAAAAT 16898 >seq572 Length=83913 Score = 91.5 bits (100), Expect = 4e-13 Identities = 201/299 (67%), Gaps = 7/299 (2%) Strand=Plus/Plus Query 288964 TGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtt 289023 |||||||| || | ||| |||||||||||| |||| | | ||| | ||| ||| Sbjct 4170 TGATTAAGAGTGTTTTCTCTTTCATCATTTCCACCTGAGAACTGGCCC---TTGCTTCTT 4226 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 | | |||||||||| || ||||| ||||| | | || || | ||| || || Sbjct 4227 GTGCGAGCAACAGCATCGATCTCGTCGATGAAGACAATGCAGGGCGCGTTTGCTCGAGCT 4286 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 | ||| || |||| ||||| |||| || | || ||| |||| || | ||| || Sbjct 4287 TCTCGAAACAAGTCTCGCACACGTGATGGACCCACCCCCACAAACATCTCAATAAAATCG 4346 Query 289144 GAAGCG--GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAA 289201 ||| || |||||| || || | || | || || ||||| ||| ||||||||| Sbjct 4347 GAACCGGAGATACTGTAA--AACGGAACGCTGGCCTCTCCTGCAGTAGCCTTCGCCAGAA 4404 Query 289202 GTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCA 289260 | || || || ||||| ||||| || | | || |||| ||||| | |||||| ||| Sbjct 4405 GCGTTTTTCCGGTTCCTGGTGGACCAACAAGTAATGCTCCTTTTGGAATTTTTGCACCA 4463 >seq693 Length=24918 Score = 84.2 bits (92), Expect = 6e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 353971 TGAGATATAATAATCACACCCCCAAGATAGCTCTTAATTGCTGTGGCGAGAGCACCAAGC 354030 || || || |||| ||||| ||| | || || ||| || | || |||||||| || Sbjct 9062 TGTGAGATCATAACAACACCTCCACCAAAGTTCACAATAGCGGCAGCAAGAGCACCCAGT 9003 Query 354031 GAGTCACGGTCGAGGAAATTAGTAGGTTCGTCAAGGATAAGAACGTGCGGCTCCATCCAC 354090 || || || || || |||| || ||||||||||||| | |||||| || || |||| Sbjct 9002 GAATCGCGATCCAGATAATTCGTTGGTTCGTCAAGGACTAAAACGTGAGGAAACAGCCAC 8943 Query 354091 ATTGCTGCAGCCAGAACTACCTTAACCTTCTGTCCGCCTGATAG 354134 || ||||| | || || | ||| || ||||| || || ||||| Sbjct 8942 ATGGCTGCTCCAAGGACCAACTTGACTTTCTGACCACCGGATAG 8899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471592646938073