Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq3366 111 2e-18 seq5269 98.7 2e-14 >seq3366 Length=157547 Score = 111 bits (122), Expect = 2e-18 Identities = 222/328 (68%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||| || |||||||| | || || |||||| || || ||||| | || || ||| Sbjct 39276 CCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATCAATCCTCGTTTC 39335 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || |||||||| || | ||||| || ||||||||||| || |||||||| |||||| Sbjct 39336 TTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCGACGGCCGCAAAG 39395 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTG--TTGATCCACTTCATCGCCC 794518 | || | | || ||||| | |||| ||||| | | ||| |||| ||||| Sbjct 39396 GCTACCACTCTTTCTGCAAA-----CGAGGCATACTTTGGATCGCACCATTTCAACGCCC 39450 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCT 794578 | | ||| || || | || | || | || || || |||| | | || | || | Sbjct 39451 ATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCATAGTAAATGCTGTTTTT 39510 Query 794579 CGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTT 794638 || || || |||| ||| || || || | | ||| || || ||||| || |||| Sbjct 39511 CGGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTGTATATTTT 39570 Query 794639 CGATGGCGATCTGGAAGCCATAAAAGCA 794666 | || || || ||||| ||||||||||| Sbjct 39571 CTATTGCAATTTGGAATCCATAAAAGCA 39598 >seq5269 Length=35660 Score = 98.7 bits (108), Expect = 2e-14 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 |||||||| || ||||| || || || |||||||| |||||| ||| || ||| || Sbjct 21859 TTGGTGACTGCTTTGGTTCCTTCAGAAACGGCGTGTTTGGCCAATTCACCTGGCAGCATA 21800 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCG--CTTGTTAGTGCGCG 1485592 || || |||| || ||||| || || | ||| | || || || |||||| || | Sbjct 21799 AGTCGTACGGATGTTTGGATTTCACGACT--CGAAAGAGTAGCCTTCTGGTTAGTTCGTG 21742 Query 1485593 CCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGA 1485652 || || || |||||| | || || || | || ||||||| ||| |||||||||| Sbjct 21741 ACAATTTTCCTGCTTCGGTGGCAATTCGTTCAAAAATATCGTTGATAAAGGAGTTCATGA 21682 Query 1485653 TCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAA 1485712 | ||||| | | || || || || || |||||||| || ||||||||||||| Sbjct 21681 TGGACATTGCGCGTCTTGAAATTCCAACTTCTGGGTGCACTTGGCGCAGCACCTTGTAAA 21622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7914977457861831