Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq343 89.7 5e-13 seq6751 86.0 6e-12 >seq343 Length=30199 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/192 (71%), Gaps = 4/192 (2%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGT--GGACGAGTCCTCGAGCTGCTTGCCCGCGTA 133528 |||| || || |||||||| | | ||| || || ||||| | || || || ||| | Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCG--TCCTCCAATTGTTTTCCTGCGAA 12670 Query 133529 AATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTG 133588 ||| | ||||| ||||||||||| || ||||||||||| ||||| ||| | | Sbjct 12671 AATCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATT 12730 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 || | ||||||| | || || || | |||| ||||| ||||| || || || || Sbjct 12731 ATCGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGAC 12790 Query 133649 GAAAATCTGCAT 133660 |||||||||||| Sbjct 12791 GAAAATCTGCAT 12802 >seq6751 Length=68926 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || || |||||||| || |||||||| | | ||| ||| || || || || || Sbjct 5288 GTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCA 5229 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 ||| | || || || ||||| || ||||| || ||||||||||| |||||| ||| Sbjct 5228 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 5169 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | ||| || || | || | |||||| || ||||| || Sbjct 5168 ACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTC 5109 Query 133644 TTTACGAAAATCTGCAT 133660 || || ||||| ||||| Sbjct 5108 TTAACAAAAATTTGCAT 5092 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/201 (70%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || |||||||| || |||||||| | | || ||| ||| || || || || | Sbjct 5060 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGT--ACGTCCGTCTTCTAGTTGTTTTC 5003 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || ||||| || ||||| || ||||| ||||| ||||| || Sbjct 5002 CAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCT 4943 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | |||||| | | ||| || || | |||| ||| || || || || | Sbjct 4942 TTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCG 4883 Query 133642 TTTTTACGAAAATCTGCATGG 133662 |||| || ||||||||||||| Sbjct 4882 TTTTCACAAAAATCTGCATGG 4862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483348715915960