Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq343 125 5e-24 seq6751 122 6e-23 seq957 87.8 1e-12 >seq343 Length=30199 Score = 125 bits (138), Expect = 5e-24 Identities = 144/191 (75%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| ||||||||||| | ||| || || |||| |||||||||||||| || |||| Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 12672 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 |||||||||| || || | || | ||||| ||||| ||| ||| ||| |||| Sbjct 12673 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTC-ACATTA 12731 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||||| |||||| || |||| ||||| ||||| || || | || || || Sbjct 12732 TCGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACG 12791 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 12792 AAAATCTGCAT 12802 >seq6751 Length=68926 Score = 122 bits (134), Expect = 6e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | |||| ||| || || |||||| || ||||||||||| | Sbjct 5775 ACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGC 5716 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| |||| |||||| ||||||||||| | ||| ||||| ||| | || Sbjct 5715 AAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGG 5656 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||||||||| || ||| ||| |||| ||| | || || ||||||| Sbjct 5655 AATTCCTTCTTTGTCCTGGATCTTCGCCTTC-ACATTGTCGATAGTATCTGAAGATTCCA 5597 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||| || ||||| || || | ||| || ||||| || ||||| Sbjct 5596 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 5548 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| |||||| || | || ||||| || ||||||||||| | Sbjct 5546 CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 5487 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| |||| || | |||||| ||||| || |||| ||| |||||||| | || Sbjct 5486 AGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGA 5427 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || ||| ||| || | ||| | ||||| ||| || || Sbjct 5426 ATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACGTTGTCAATAGTGTCTGATGACTCTAC 5368 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || ||||| || || || ||||| ||||| |||||||| Sbjct 5367 TTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 5320 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||||| ||| || || | || ||||| || ||||||||||| | Sbjct 5090 CCACCACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCA 5031 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || ||| |||| || | ||||||||| || || |||| ||| |||||||| | || Sbjct 5030 AGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGA 4971 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||| || | | |||| || | ||||| || || || Sbjct 4970 ATTCCTTCTTTGTCTTGAATCTT-GGCCTTTACATTATCGATCGTGTCTGAAGACTCAAC 4912 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | |||||| ||||| |||||||| || Sbjct 4911 TTCCAAAGTGATGGTCTTTCCAGTAAGCGTTTTCACAAAAATCTGCATGGT 4861 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 ||||| || ||||||||||| | || || ||| |||| || | ||||||||| || || Sbjct 5282 TCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCAGCGAAG 5223 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| ||| |||||||| | || | ||||| ||||| || ||| ||| || | Sbjct 5222 ATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC-ACGTT 5164 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | ||||| ||| || || || | || || ||||| || || | ||| || || Sbjct 5163 GTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTCTTAAC 5104 Query 33738 AAAGATCTGCAT 33749 ||| || ||||| Sbjct 5103 AAAAATTTGCAT 5092 >seq957 Length=34123 Score = 87.8 bits (96), Expect = 1e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || |||| |||| ||||| ||||| ||||| || ||||||||||| | Sbjct 26944 CACCACCACGTAATCGTAGAACCAGATGTAACGTGCTTTCTTTCTGGATGTTGTAATCCG 26885 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | ||| || | || ||||||||||| || |||||||| | |||||| || || | | Sbjct 26884 CTAATGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATGAGACGCTGTTGGTCCGGGG 26825 Query 33641 GCACACCT 33648 | | |||| Sbjct 26824 GAATACCT 26817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328656211471680