Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq6751 134 3e-26 seq343 86.0 1e-11 >seq6751 Length=68926 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| |||||||| || ||||| || |||||||||||||| || ||| ||| Sbjct 4867 CAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCAGAC 4926 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| |||||| ||||||||||| |||||||||||| || || ||| Sbjct 4927 ACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAGCAA 4986 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| ||||| || | ||||| ||| | ||| | || ||||||||| || Sbjct 4987 CGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAACATC 5046 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 5047 CAGAAAGAATCAAC 5060 Score = 116 bits (128), Expect = 9e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || || |||||||||||| ||| || || |||| Sbjct 5563 AAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCAGATACTATCGACAAT 5622 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||||||| || ||| ||| | || || || Sbjct 5623 GTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAGCAACGTCTAATTTTT 5682 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || || ||||||| ||| | || | || ||||||||| | |||||||||||| Sbjct 5683 GCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAACATTCAGAAAGAGTCT 5742 Query 206365 ACTCTTCACCTTGT 206378 || ||||| || || Sbjct 5743 ACGCTTCATCTGGT 5756 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| | || |||||||| || ||||||||||| || || ||| Sbjct 5323 CAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATCAGAC 5382 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || ||||||||| || || ||| Sbjct 5383 ACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAA 5442 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || || | ||||| ||| | || | || ||||||||| || Sbjct 5443 CGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAACATC 5502 Query 206353 CAGAAAGAGTCTAC 206366 |||||||| || || Sbjct 5503 CAGAAAGAATCAAC 5516 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || ||||| || ||||||||||| || || ||||| | || Sbjct 5107 AAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCGGACACTATTGACAAC 5166 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||||||| || || ||| | || |||||| Sbjct 5167 GTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAGCAACGTCTGATCTTC 5226 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||| || | ||||| ||| | || | || ||||||||| | |||||||| || Sbjct 5227 GCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAACATTCAGAAAGAATCA 5286 Query 206365 AC 206366 || Sbjct 5287 AC 5288 >seq343 Length=30199 Score = 86.0 bits (94), Expect = 1e-11 Identities = 131/187 (70%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || ||||| |||||| | || || ||| || ||| Sbjct 12799 CAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCCGAC 12740 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||||||||| || ||||||||| || ||| || Sbjct 12739 ACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAACAG 12680 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | | || ||||| ||||| || ||||| || || | || | || ||||||||| || Sbjct 12679 CGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAACATC 12620 Query 206353 CAGAAAG 206359 || |||| Sbjct 12619 CAAAAAG 12613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181640170139609