Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3366 280 1e-70 seq2177 143 2e-29 >seq3366 Length=157547 Score = 280 bits (310), Expect = 1e-70 Identities = 624/910 (69%), Gaps = 36/910 (4%) Strand=Plus/Minus Query 43684 AGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||||||| | |||||| | ||||| || ||| | ||| || ||| | ||||| Sbjct 39854 AGAAAATCCGAACCGCTTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTA 39795 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGC 43803 || |||||| |||| |||||||| ||||||||| | |||||| | ||| | Sbjct 39794 TAAGAAAGCAGAGGCAAGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAA 39735 Query 43804 ACATTGGATTGCATTAAAACC-ACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTT 43861 | ||| || | || | | |||| || | ||| ||||| || ||||| || Sbjct 39734 TGACTGGCTT--AATATATCGGACAATGAGAGACACTTTATCAAACACGTGTTGGCCTTC 39677 Query 43862 TTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAA-GAAGT 43920 ||||| || || || ||||| || ||||||||| | | | | ||| ||| || || Sbjct 39676 TTTGCAGCCAGTGATGGGATTGTTAATGAAAATCTCGCCA-TGAATTTCAGCAGTGAGGT 39618 Query 43921 TCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTC 43980 |||| | || ||||| ||||| |||||||| || |||||||| ||||||||||| || || Sbjct 39617 TCAAATCCCGGAAGCTCGATGCTTTTATGGATTCCAAATTGCAATAGAAAATATACACTC 39558 Query 43981 GGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATT 44040 |||| |||| | |||| ||||| |||||||||||| ||| || || | || Sbjct 39557 GGAAGTGTATTCGTTATTGATTGATACATACATCAAAGATCCAACCGAAAAACAGCATTT 39498 Query 44041 GTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAAT 44099 | ||||| |||||| | || |||| ||| |||||||| | ||||| | |||| Sbjct 39497 ACTATGCGCGATTGAAACAATCCCGTGCG-TTACCAATAAAGCACAATGGGCGTTGAAAT 39439 Query 44100 GGATAAATTCAAATGAT---TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAG 44156 || || |||| || || |||| |||| || | || || ||||| | || |||| Sbjct 39438 GGTGCGATCCAAAGTATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAG 39379 Query 44157 GCATTTTCTTTTCAGGATCGTT-TGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATG 44215 | || || || || ||||| || ||| | ||||||||| | ||||||||||| |||||| Sbjct 39378 GAATCTTTTTCTCCGGATCATTCTGCT-CTATATTTTGGCTGAAGAAACGAGGATTGATG 39320 Query 44216 CCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTT 44275 ||||| | |||||||||||| | || |||||||||||||| ||||||| || ||| Sbjct 39319 CCTGGACTTTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTT 39260 Query 44276 GCTTGCTTG--TTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAG-ACAATTACA 44332 || || || |||| | | || | | ||||| |||| | | | | ||| Sbjct 39259 GCATGTCTGATGTACTCG--AAACTGGTA---AATAAG-CTTCCAGAAGGCTCTATTCAT 39206 Query 44333 GATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACA-GCATTACCTGT 44391 | || || || || || | || |||||||||||| | || | | || | || || Sbjct 39205 GCAATCATTTCCGACGCCGTTATCATCGAACAAGAATTTGT-ACGAGATTCACTTCCAGT 39147 Query 44392 AAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCG 44451 | |||| ||||||||| | ||||||| ||||| || || | | || ||||| Sbjct 39146 CGAGCTAATTGGAATGAATTCAAGTTTGATGGGTCAATACATCGAGTTTGTGGCGGATCG 39087 Query 44452 TTTACTTTTGGAACTGGGTTGCGATAAACA--CTATAT---TGTACAAAACCCGTTTGAT 44506 || | | ||| | ||| | | || ||||| | | || ||| ||||| Sbjct 39086 ATTGTTACATGCACT---TGGCG-TCAGCAAGTTATATCACGCTTCTAATCCC-TTTGAC 39032 Query 44507 TTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAA 44566 | ||||| | ||||| || |||| ||||||||||||||||| ||||||||||||||| Sbjct 39031 TGGATGGATATGATTTCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAA 38972 Query 44567 TATCAGCGAA 44576 ||| ||||| Sbjct 38971 TAT--GCGAA 38964 >seq2177 Length=6073 Score = 143 bits (158), Expect = 2e-29 Identities = 220/314 (70%), Gaps = 0/314 (0%) Strand=Plus/Minus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 |||||||| || || | || ||||| ||||| || || |||||||| || || Sbjct 5003 CGACGTATCATCTTATCCGGTTGGAATCCAACCGATTTAGCCGAAATGGCATTACCTCCC 4944 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 |||||| | | || || ||||||||| ||||| ||| | ||||| ||| |||| || Sbjct 4943 TGTCATCTCATGTGCCAATTTTACGTTGCAAATGGGGAATTATCATGCCAAATGTACCAG 4884 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 |||| | ||| || || || || || || ||||| || || || || || || | || Sbjct 4883 CGATCCGCTGATATTGGTCTGGGCGTTCCATTTAATATTGCTAGCTACGCGCTTTTGACA 4824 Query 41184 TATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGAT 41243 | |||||||||||||| || || | |||| || || |||||||| | | |||||| Sbjct 4823 AAAATGATTGCACACGTGACTGATCTCCAACCCGGCGAGTTTGTTCATGTGATCGGAGAT 4764 Query 41244 GGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGA 41303 | ||||| ||||| |||||| | || ||| || | |||||| ||| | || | Sbjct 4763 GCCCATATCTACATGAATCACTTGGAACCGCTACAGGCACAACTTGAACGCACTCCACGC 4704 Query 41304 CCATTTCCAACGCT 41317 || |||||||| || Sbjct 4703 CCGTTTCCAACACT 4690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397398215983645