Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq113 138 1e-27 seq6566 116 4e-21 seq10387 109 6e-19 >seq113 Length=12257 Score = 138 bits (152), Expect = 1e-27 Identities = 255/374 (68%), Gaps = 0/374 (0%) Strand=Plus/Plus Query 53264 CAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAG 53323 ||||||| ||||||||| || || || || || ||||| || || ||| || || || Sbjct 4211 CAAAAGTTCTTTACGCATGCAACTCCGACGCTTTTCAATGCGGGAACGCCTCGACCCCAA 4270 Query 53324 ATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACG 53383 | ||| || || || | | ||| | ||||| || ||||||||||| ||||| ||| Sbjct 4271 TTATCGTCGTGTTTTCTATTATCCATGCAAGATGATTCTATCGACGGCATTTACGACACG 4330 Query 53384 CTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAAC 53443 || || | ||||| || || |||||| | || ||||| || || || || Sbjct 4331 CTGAAACAATGTGCGTGTATTTCAAAGTGGGCTGGCGGTATTGGCGTCAGTATTTCCAAT 4390 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || | | | || || |||||||| || | ||||||| || || Sbjct 4391 ATTCGCTCCACCAACAGTTATATTCGCGGGACGAATGGAAGTTCGAATGGAATTGTTCCA 4450 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| || || ||||| |||| || || ||||| | || |||||||||||||| || Sbjct 4451 ATGCTTCGGGTGTTCAATGACACAGCTCGATACGTTGATCAAGGTGGTGGGAAGCGGAAA 4510 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 ||||| || || || || || ||||| ||||| || || || | |||||||| || || Sbjct 4511 GGGTCTTTTGCAATTTATCTAGAGCCCTGGCATGCGGATATCTTTGAGTTTCTGGAACTA 4570 Query 53624 CGTCTGAATCAGGG 53637 ||| |||||| || Sbjct 4571 CGTAAGAATCATGG 4584 >seq6566 Length=60915 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 ||| ||||| ||||| | ||| || ||||| || |||||| || || ||||| || || Sbjct 7766 CGTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTG 7707 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || || | || | |||| ||| |||| || || | | ||| |||| || || Sbjct 7706 ACCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAAC 7647 Query 152148 AATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCC 152207 ||| || ||||| || ||||| || |||||||| || ||||| ||||| Sbjct 7646 AATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACAATATCC 7587 Query 152208 CGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCAC 152267 |||| ||| || || ||||| ||| | || || ||||||||||| ||| | | || Sbjct 7586 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 7527 Query 152268 CTTGCGCTGGGATGGTTTCAAACCGTC 152294 ||| || || |||| |||||| ||||| Sbjct 7526 CTTCCGTTGAGATGTTTTCAACCCGTC 7500 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/250 (69%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || || || |||| ||| |||||||| || ||||| ||| || || |||||||| Sbjct 7765 GTAAAGATATATCGAGGGCTAGCAGCATCTTTTCCACCTTGAAGGCGGGTTCCGAATTGA 7706 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || || | || | || | ||| |||| || ||| ||| || |||| ||| ||| Sbjct 7705 CCTGAAGGATACAGCATATTGATGTTATTGGAACCAACATAGTCCTGCGCCATGTTAACA 7646 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTC-CGCCACGTAGCC 117483 || ||| || || ||||||||||| |||||||| || ||||| | || || || Sbjct 7645 ATAGTAGAGTGCAGCGATGCCTCACCATGATGATACGCTGTATGCTCACTACA-ATATCC 7587 Query 117484 CGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCAC 117543 |||||||| || || ||||| || | || || |||||||| || || | | || Sbjct 7586 GGCCAGCTGTGCTACTTTCATTTCCTGTGAAAGTTTTTTCTTGAGACATGCGAACAATAC 7527 Query 117544 CTTGCGCTGA 117553 ||| || ||| Sbjct 7526 CTTCCGTTGA 7517 >seq10387 Length=58343 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| |||||||| || |||||| | || |||||||||||| Sbjct 22715 GTGAAAATGTAACGAGGGCTAGCAGCATCTTTCCCACCAAGTATCCGAGTACCGAATTGT 22656 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || ||| || ||| || || || ||||| |||||||| || | Sbjct 22655 CCATTTGGAGACAATAGATTCGTATTATTACTTCCGGTAAAGTCTTGAGCCATATTAATG 22596 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| || || || || || || ||||||||||| | || ||||| | || || || Sbjct 22595 ATCGTTCCATGCAGACTTGCTTCTCCATGGTGATAAGACGAATGCTCTGATACATAACCG 22536 Query 117485 GCCAGCTGAGCCACCTTCATGTC 117507 || || || ||||| || || || Sbjct 22535 GCGAGTTGTGCCACTTTGATTTC 22513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547134403254200