Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6751 122 8e-23 seq343 122 8e-23 seq1823 82.4 7e-11 >seq6751 Length=68926 Score = 122 bits (134), Expect = 8e-23 Identities = 166/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| || || || ||| | || ||| | ||||| || | | Sbjct 4862 CCATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTT 4921 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | ||| |||| || | || || || ||||||||||||||||| || || || |||| Sbjct 4922 CAGACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATC 4981 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || ||| | || | ||| || |||||| | |||||| | || || | ||||||| Sbjct 4982 AGCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACA 5041 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| || || || || || || || || || | ||| | || ||||| || Sbjct 5042 ACATCCAGAAAGAATCAACGTTGCACTTAGTGCTACGTCTTCGTGGTGGAAT 5093 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| ||||| |||| || || |||| ||| | ||||| || | || Sbjct 5320 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATCA 5379 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 5380 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 5439 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACAA 27166 || ||| | || | |||||| |||||| | |||||| | ||| || || | |||||||| Sbjct 5440 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGAC-GGACGAACGCTTGCGGATTACAA 5498 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || || || || || || ||||| | ||| | || ||||| || Sbjct 5499 CATCCAGAAAGAATCAACGTTGCACTTGGTGCTACGTCTTCGTGGTGGAAT 5549 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || || ||||||| | ||||||||| | || Sbjct 5548 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 5607 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || ||||||||||| || || || || || Sbjct 5608 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 5667 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| |||| | ||||| |||||| |||||||| | || || | ||||||||| Sbjct 5668 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 5727 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| || ||||| || | ||| |||| | ||| | || ||||| Sbjct 5728 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGG 5774 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || || | || ||| | ||||| || | || Sbjct 5092 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATCG 5151 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 5152 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 5211 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 || ||| | || | ||| || |||||| | |||||| | ||| || || || ||||||| Sbjct 5212 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGA-CGAACGCTTGCGGATTACAA 5270 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || || || || || || || || | || | || ||||| || Sbjct 5271 CATTCAGAAAGAATCAACGTTGCACTTAGTGCTTCGCCTCCGTGGTGGAAT 5321 >seq343 Length=30199 Score = 122 bits (134), Expect = 8e-23 Identities = 142/189 (75%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| || | || |||||||| || ||| | ||| Sbjct 12802 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 12743 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || ||||||||||| ||||| || || ||||| ||| Sbjct 12742 GACACCATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 12683 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCG-ATTACAA 27166 |||||||| || | ||| || ||||||||||| ||| | ||| || | || ||||||| Sbjct 12682 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGC-CGAACGCTCGCGGATTACAA 12624 Query 27167 CATTCAAAA 27175 ||| ||||| Sbjct 12623 CATCCAAAA 12615 >seq1823 Length=40296 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 ||||| || ||||| ||| | | ||| ||||||| | ||||| || ||||||||| Sbjct 10865 ATTACACTCGAAGTAGAATCAGCGGACACGATTGACAATGTCAAGAGCAAGATTCAAGAC 10806 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || || || || ||||| ||| |||| | ||||| |||||| | |||||| Sbjct 10805 AAGGAAGGAATTCCTCCTGACCAACAACGTCTAATTTTTGCCGGAAAACAACTTGAAGAC 10746 Query 27144 AGT 27146 || Sbjct 10745 GGT 10743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434853548230080