Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6751 129 4e-25 seq343 122 6e-23 seq957 84.2 1e-11 >seq6751 Length=68926 Score = 129 bits (142), Expect = 4e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || |||||| | |||||||| || | Sbjct 4864 ATGCAGATTTTTGTGAAAACGCTTACTGGAAAGACCATCACTTTGGAAGTTGAGTCTTCA 4923 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | |||| || ||| ||||||||||| | || || ||||| Sbjct 4924 GACACGATCGATAATGTAAAGGCCAAGATTCAAGACAAAGAAGGAATTCCTCCTGATCAG 4983 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | || || || || |||||||| ||||||| ||| ||| | | ||||||||| Sbjct 4984 CAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGTACTCTTGCGGATTACAAC 5043 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || ||||| || || || || ||||| Sbjct 5044 ATCCAGAAAGAATCAACGTTGCACTTAGT 5072 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || || | ||||| || || | Sbjct 5547 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTC 5606 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || ||| | || ||| | || | || | | ||||||||||| | || ||||| | Sbjct 5607 AGATACTATCGACAATGTGAAGGCGAAGA-TCCAGGACAAAGAAGGAATTCCTCCAGACC 5665 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | || ||| |||| |||||||| |||||||||||||||| |||||| | | ||||||| Sbjct 5666 AGCAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACA 5725 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || |||||||| || Sbjct 5726 ACATTCAGAAAGAGTCTAC 5744 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || || ||||| || ||| | ||||| || || | Sbjct 5091 AATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACCATAACTTTGGAAGTCGAGTCATC 5150 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 5151 GGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 5210 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || || || |||||||| ||||||| ||| || | | |||||||| Sbjct 5211 GCAACGTCTGATCTTCGCTGGAAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 5270 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || ||||| Sbjct 5271 CATTCAGAAAGAATCAACGTTGCACTTAGT 5300 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || |||||| | || |||||||| || ||| | ||||| || || | Sbjct 5319 AATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTAGAGTCATC 5378 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||| | | || || || ||||| ||||| | || || ||||| Sbjct 5379 AGACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCA 5438 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || || ||||| |||||||| ||||||| ||| || | | |||||||| Sbjct 5439 GCAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAA 5498 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || || || || || Sbjct 5499 CATCCAGAAAGAATCAACGTTGCACTTGGT 5528 >seq343 Length=30199 Score = 122 bits (134), Expect = 6e-23 Identities = 151/203 (74%), Gaps = 3/203 (1%) Strand=Plus/Minus Query 23600 AATTACTTAA-AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAA 23658 || ||||||| ||||||||||||||| || || ||||| || ||||| |||||||| || Sbjct 12814 AACTACTTAAGAATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAG 12755 Query 23659 GTTGACTCCACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGT 23717 || || || | ||||| | || ||| | || | || | || ||||| ||||| | Sbjct 12754 GTCGAATCATCCGACACCATCGATAATGTGAAGGCGAAGA-TTCAAGACAAGGAAGGAAT 12696 Query 23718 ACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT 23777 || || || ||||||||||| || || || || |||||| |||| |||| || || | Sbjct 12695 TCCTCCCGACCAACAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCT 12636 Query 23778 AGGCGATTACAACATACAAAAAG 23800 | ||||||||||| ||||||| Sbjct 12635 CGCGGATTACAACATCCAAAAAG 12613 >seq957 Length=34123 Score = 84.2 bits (92), Expect = 1e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 23712 AGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG 23771 |||| | || || || ||||||||| | || ||||| || |||||| ||||||| | || Sbjct 26817 AGGTATTCCCCCGGACCAACAGCGTCTCATTTTTGCTGGGAAACAATTGGAAGATGGTCG 26876 Query 23772 CACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCG 23831 || |||| ||||||||||| || ||||| ||| |||||| | ||| || | || || Sbjct 26877 AACATTAGCGGATTACAACATCCAGAAAGAAAGCACGTTACATCTGGTTCTACGATTACG 26936 Query 23832 AGGAGG 23837 || || Sbjct 26937 TGGTGG 26942 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337960458579932