Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq237 188 2e-42 seq6751 134 3e-26 seq343 114 3e-20 seq9 114 3e-20 seq1943 113 1e-19 seq138 107 5e-18 seq124 107 5e-18 seq272 102 2e-16 seq334 84.2 5e-11 >seq237 Length=1657 Score = 188 bits (208), Expect = 2e-42 Identities = 216/288 (75%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 7441 ACGTTATATTTAATATTTGGTGGCTTTTCTGGTATTA-TAGGTACTATATTTTCTATGAT 7499 || ||||||||||| ||||||| ||||| || |||| ||||||| | | ||||||| | Sbjct 1564 ACTTTATATTTAATTTTTGGTGCTTTTTCAGG-ATTAGTAGGTACAACACTTTCTATTTT 1506 Query 7500 TATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTA 7559 || | | |||||| | || ||| ||| || || | |||||| ||| | || Sbjct 1505 AATTCGTATGGAATTATCACAACCTGGTAATCAGATTTTTATGGGTAATCATCAATTATA 1446 Query 7560 CAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTAT 7619 || || || | || || ||||| || ||||||||||| ||| | |||||||| ||| | Sbjct 1445 TAATGTAGTTGTAACAGCACATGCGTTCGTTATGATTTTTTTTATGGTTATGCCTGTTTT 1386 Query 7620 GATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTT 7679 || || ||||| |||||||| || | ||||||||||| || || |||||||||||||| Sbjct 1385 AATTGGAGGTTTTGGAAATTGGTTTATACCTTTAATGATAGGAGCCCCTGATATGGCTTT 1326 Query 7680 TCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATT 7727 ||| || | || |||||||||||||| ||| | || ||||| ||||| Sbjct 1325 TCCTAGAATGAATAATATAAGTTTTTGGTTATTGCCTCCTTCTTTATT 1278 Score = 113 bits (124), Expect = 1e-19 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||| ||||| || |||||||||||||| | |||||||| ||||| ||||| Sbjct 881 TTCAGGATGACCGAAAAACCAAAATAAATGTTGATATAATATAGGATCACCTCCACCTGA 940 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 |||||| |||| |||||| ||||||||||| ||||| |||| Sbjct 941 AGGATCATAAAAAGAAGTATTTAAATTTCTATCTGTTAATAACA 984 Score = 93.3 bits (102), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 371385 TAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGCCTAGAAGAGA 371444 |||||| || ||||||| ||| |||| || | || ||| ||||| || |||| | ||| Sbjct 1079 TAAACCTGGAGCTCTCATGTTATATATAGTCGAAAGAAAATTTATTGCTCCTAATAAAGA 1138 Query 371445 AGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGCCGGAGTGAGC 371504 ||| || || | | |||||||||||| ||||||||||| || ||| || || || || Sbjct 1139 AGAAATTCCAGATAAATGTAAACTAAAAATTGCTAAATCTACCGAAGGACCTGAATGTGC 1198 Query 371505 TACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGTTC 371545 | ||| | ||| || || ||||| || || || |||| Sbjct 1199 TTGTATACTAGATAAAGGAGGATAAACAGTCCAACCTGTTC 1239 >seq6751 Length=68926 Score = 134 bits (148), Expect = 3e-26 Identities = 154/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | ||| Sbjct 5085 ACGAAGACGTAGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGT 5026 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || |||||||| || || ||||||||||| || ||||| || || || ||||| || Sbjct 5025 ACGTCCGTCTTCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 4966 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| |||||||| ||||| ||| ||| ||||| |||||||| | || || || || Sbjct 4965 TTCTTTGTCTTGAATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAA 4906 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTT 225698 ||||| ||||| || || | ||||| Sbjct 4905 AGTGATGGTCTTTCCAGTAAGCGTTTT 4879 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || | ||| | || |||||||| |||| |||||||| || | || Sbjct 5541 ACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGT 5482 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 || || |||||||| || || || |||||||| || ||||| || || || ||||| || Sbjct 5481 TCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCC 5422 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||||||||| |||||||| |||||| || || |||||||| | || || || || Sbjct 5421 TTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCTACTTCCAA 5362 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || || ||||| ||||| | || | |||||| Sbjct 5361 AGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 5319 Score = 118 bits (130), Expect = 3e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || |||||||| || | |||||||| || | |||| || |||||||| || || ||| Sbjct 5288 GTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCA 5229 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || ||||| || || || ||||| ||||||||||| |||||||| |||| Sbjct 5228 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 5169 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || || || ||||| || | || || || || || || || || || |||| || Sbjct 5168 ACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTC 5109 Query 225697 TTTATGAACACTTGCATT 225714 || | || | ||||||| Sbjct 5108 TTAACAAAAATTTGCATT 5091 >seq343 Length=30199 Score = 114 bits (126), Expect = 3e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 225524 CTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGA 225583 ||||||||| |||||||| || | |||| || || || | || || || ||||| | Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 12672 Query 225584 TAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTT 225643 | | || ||||||||||| ||||| |||||||||||||| ||||| ||||||| | Sbjct 12673 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 12732 Query 225644 CGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTTTATGA 225703 |||||||||| || | ||| || || | ||||| || || || || | || || | || Sbjct 12733 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 12792 Query 225704 ACACTTGCATT 225714 | | |||||| Sbjct 12793 AAATCTGCATT 12803 >seq9 Length=872 Score = 114 bits (126), Expect = 3e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || |||||||| || || ||||| ||||| ||||| || Sbjct 448 GAAAATTTGACCATCAGTAATTGAAATAACATTAGTTGGTATATATGCAGATACATCTCC 507 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 |||||| ||||| | || |||||| ||||||| || |||| || | ||||||||| Sbjct 508 TGCTTGAGTTTCTATAATAGGTAAAGCTGTTAAAGAACCACTTCCCATTTTTTTATTT 565 >seq1943 Length=3773 Score = 113 bits (124), Expect = 1e-19 Identities = 90/106 (85%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAA--GGGC 6823 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 1498 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGGC 1439 Query 6824 AGCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAAT 6869 ||||||| |||| || ||||||| |||||||||||||| || ||| Sbjct 1438 AGCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAGCAAT 1393 >seq138 Length=349 Score = 107 bits (118), Expect = 5e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 7726 TTTCTAGGGTTGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTT 7785 |||| || ||||||||| |||| |||| |||| ||||||||||||| ||||||||||| Sbjct 127 TTTCAAGAGTTGGTAAGGTTCTGCGCGTATTATCGAATTAAACCACATGCTCCACCGCTT 68 Query 7786 ATACAATCTTCCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGGA 7844 | | || |||||| || |||||| ||| ||||||||| ||||| | ||||| ||| Sbjct 67 GTGTAGACTCCCGTCAATTCCTTTGAATTTCAACCTTGCGATCGTACTTTTCAGGCGGA 9 >seq124 Length=866 Score = 107 bits (118), Expect = 5e-18 Identities = 86/101 (85%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 6767 TTGAGAGAATGATCAGCCACATTGGGACTGA-AAACGGCCCAAGTCTTCTAAAAG-GGCA 6824 |||| |||| ||||||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 672 TTGAAAGAACGATCAGCCACATTGGGACTGAGAAACGGCCCAAACTTTTTAAAAAAGGCA 731 Query 6825 GCAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAG 6865 |||||| |||| || ||||||| |||||||||||||| || Sbjct 732 GCAGTGAGGAATTTTGGACAATGAGCGAAAGCTTGATCCAG 772 >seq272 Length=492 Score = 102 bits (112), Expect = 2e-16 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 372623 AGGTGTAACAGAA-TAGAGGGTAGCGACTGTTTACTAAAAACACAGGACTCCGCTAAGTT 372681 |||||| ||| || | |||||| ||||||||||| |||||||||||||||| ||||| | Sbjct 356 AGGTGTCACAAAAATTGAGGGTTGCGACTGTTTAATAAAAACACAGGACTCTGCTAAATG 297 Query 372682 GTAAAACGATGTATAGGGTCTGACAC 372707 |||| | ||||||||||||||||||| Sbjct 296 GTAACATGATGTATAGGGTCTGACAC 271 >seq334 Length=911 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 371784 TTTTGGTAGGCTCTTTATCCTTAACTGGATTTCCGTTTTTGACCGGTTTCTATTCTAAAG 371843 |||| |||| |||||||| |||| |||||||| ||||| | ||||| |||||||||| Sbjct 521 TTTTAATAGGTTCTTTATCTTTAATAGGATTTCCTTTTTTAAGTGGTTTTTATTCTAAAG 580 Query 371844 AAGTAGTTTTAGAGATAGCATTTTCTAAGTTTTCGATTAATA-GtttttttATTTATTGA 371902 | || | ||||| ||||| |||||| |||||| ||| | || |||| |||||| Sbjct 581 ATTTAATATTAGAAATAGCTTTTTCT-AGTTTTAATATAACAGGTCATTTTGCTTATTGG 639 Query 371903 TTA 371905 ||| Sbjct 640 TTA 642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192348933158726