Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326045.1_202012-09-10] 11,929 sequences; 33,184,526 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6751 109 1e-18 seq343 105 2e-17 >seq6751 Length=68926 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| |||||||||||||| || | |||| || |||||||| ||| ||| Sbjct 5516 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCG 5457 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||| || | | ||||||||||| || || || || || Sbjct 5456 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 5397 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | ||||||| ||||||||| | ||| |||||||| || || | || Sbjct 5396 ACGTTGTCAATAGTGTCTGATGACTCTACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTT 5337 Query 152088 TTCACGAAGACCTGCATT 152105 ||||| || | ||||||| Sbjct 5336 TTCACAAATATCTGCATT 5319 Score = 107 bits (118), Expect = 4e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| |||||||||||||| || | ||| | || |||||||| ||| || Sbjct 5060 GTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCA 5001 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||| || | | |||||||| || |||||||| || || Sbjct 5000 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAATCTTGGCCTTT 4941 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 ||| | || | |||||||| ||| ||||| | ||| || || || || || || || Sbjct 4940 ACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCCAGTAAGCGTT 4881 Query 152088 TTCACGAAGACCTGCAT 152104 ||||| || | |||||| Sbjct 4880 TTCACAAAAATCTGCAT 4864 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || |||||||| ||||||||||| || ||||||||||| || | || | || ||| Sbjct 5759 AGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTCT 5700 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||| ||||| || || || | |||||||| | | |||||||| || || Sbjct 5699 TCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTCC 5640 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| | || | | |||||| || ||||| | ||||||||| Sbjct 5639 TGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGTT 5580 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || ||||| || || | |||||| Sbjct 5579 TTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 5547 Score = 87.8 bits (96), Expect = 4e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 151908 GTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCG 151967 || || ||||| || ||||||||||| || | |||| || |||||||| ||| || Sbjct 5288 GTTGATTCTTTCTGAATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTTCCA 5229 Query 151968 GCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTG 152027 |||||||| || | ||||| || | | ||||||||||| || || || || || Sbjct 5228 GCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTC 5169 Query 152028 ACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTC 152087 || | || | |||| || ||| ||||| | ||| || ||||| || || || ||| Sbjct 5168 ACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCCAGTCAGCGTC 5109 Query 152088 TTCACGAAGACCTGCATT 152105 || || || | |||||| Sbjct 5108 TTAACAAAAATTTGCATT 5091 >seq343 Length=30199 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 ||||||||||||||||||| || | |||| || || || | ||| || ||||| | Sbjct 12613 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 12672 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | | | ||| ||||| | | ||||||||||| |||||||| || || ||| | | Sbjct 12673 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 12732 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | | |||| || || || |||||||| || ||||| || ||||| ||||| |||| Sbjct 12733 CGATGGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 12792 Query 152095 AGACCTGCATT 152105 | | ||||||| Sbjct 12793 AAATCTGCATT 12803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153644449668359