Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq835 260 2e-64 seq500 210 3e-49 >seq835 Length=76541 Score = 260 bits (288), Expect = 2e-64 Identities = 439/626 (70%), Gaps = 11/626 (2%) Strand=Plus/Plus Query 24127 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 24186 |||||| |||||| || || || ||||| || || || | ||| || | || || |||| Sbjct 29783 ACATCAGACATGCAAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAA 29842 Query 24187 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 24245 | ||||| ||||| | || || || || ||||||||||| || ||| |||||||| Sbjct 29843 AGCAAAGTCCAGGCATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCG 29901 Query 24246 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTG 24305 || || || |||||||| || ||||||||||| | | ||||||| || | ||| Sbjct 29902 GAGAAAAAGATTCCTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATAC 29961 Query 24306 TCATGTATC-CACT-TTTGA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTC 24361 | || ||| ||| ||| | ||||| | || || || | || || || ||||| || Sbjct 29962 TT-TGGATCGCACCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTC 30020 Query 24362 TATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAG 24421 || || | | || | ||||||| | |||||| | |||||||||||||| | Sbjct 30021 AATCGCGCACAGTAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAA 30080 Query 24422 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGC 24481 ||||| |||||| || || ||||| || || |||||||||||||| || |||| ||| Sbjct 30081 CGAATACACTTCCGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGC 30140 Query 24482 CTCGGTAATCTGTACTTCTATAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCG 24539 |||| ||||| || || | | ||| || | || | ||||||||| || ||||| Sbjct 30141 TTCGGGGATCTGAACCTCACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCA 30198 Query 24540 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGT 24599 |||||||||||||| || ||||| || ||||| ||||| | | |||| | | || Sbjct 30199 TCACTGGCTGCAAAGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATA 30258 Query 24600 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 24659 ||| ||| ||||| || || | | ||| | |||||| | |||||||| |||| Sbjct 30259 TTAAGCCAGTCATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCC 30318 Query 24660 TCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTA 24719 ||||| || |||||||| | ||| || ||| | ||| || ||||| | ||||| | Sbjct 30319 TCTGCTTTCTTATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGG 30378 Query 24720 TTTGGATTTTTTGCAAGGATTGGTTC 24745 || ||||||| | ||| | ||||| Sbjct 30379 TTCGGATTTTCTCGAAGAAAAGGTTC 30404 >seq500 Length=28399 Score = 210 bits (232), Expect = 3e-49 Identities = 1022/1619 (63%), Gaps = 14/1619 (1%) Strand=Plus/Plus Query 53445 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 53504 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 23169 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 23228 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 23229 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 23288 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 23289 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 23348 Query 53625 TGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCAT 53684 |||| ||| | || | ||| | || | | ||| ||| | ||||| | | Sbjct 23349 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATTCTT--T 23406 Query 53685 CTATTACAAACATGTT--CAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGC 53742 || |||| | || || |||||| || || |||| ||| || || || || || || | Sbjct 23407 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 23466 Query 53743 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTG 53802 || | || | || || ||| ||| ||||| || | |||||||| | ||| || Sbjct 23467 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 23526 Query 53803 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAAT 53862 ||||| || ||||| || || || ||||| || | ||||| || || ||||| Sbjct 23527 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 23586 Query 53863 CTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT 53922 ||| || | ||| || ||| | | || || | | | | | || Sbjct 23587 CTGACTATCCAAAATGGCAAACCACAATTGCTGGGCTTTGACAGTCTTTCGGGCAATGTT 23646 Query 53923 TTCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCC 53982 || ||||| | ||| || ||||| ||| |||||| | | | || Sbjct 23647 TTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAAGTCG 23706 Query 53983 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 54042 ||| || | |||||| | || ||| ||| || || | ||| ||||||||||| Sbjct 23707 TGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCATAAA 23766 Query 54043 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||||||||| ||| | ||||| | || ||| || ||||| Sbjct 23767 CAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTCCATG 23826 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| || || || ||| | | ||||| | |||||| || || | || || | Sbjct 23827 ATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAATTGC 23886 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | | || ||| || || || ||||| | ||||| ||| |||| ||| | || Sbjct 23887 AAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGAACAC 23946 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 | | |||||||| ||| ||||| || ||||| |||||| ||||| || | Sbjct 23947 CCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGTTGGT 24006 Query 54283 GGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCA 54342 || |||||||| ||| | || || || || ||| || || || | || || Sbjct 24007 GGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACGCACA 24066 Query 54343 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 54402 | |||| | ||| || || ||||| || ||| |||||| |||| | ||||||||| Sbjct 24067 TTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAAAACA 24126 Query 54403 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 54462 || | ||| | ||| ||||||||||| || | || |||| || |||||||| Sbjct 24127 CGACGATAATTGAGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCGTAAA 24186 Query 54463 CCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 | |||| || | | | ||||| || | | | | || | || | || || || Sbjct 24187 GAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGTGTAT 24246 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || ||||||| ||| || || || | |||| | || || | Sbjct 24247 GCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCACACG 24306 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 || || || ||||| |||| ||||||||| |||||||||| ||| |||||||| || Sbjct 24307 CAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTCTATC 24366 Query 54643 GTAAATAATAACTGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT 54702 ||||| | || ||||| || || | | |||| | || ||| || | Sbjct 24367 ACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAAC-AATTCGATGCACATCGT 24425 Query 54703 TG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTGACATAGTTAAATAAATCC 54757 || | |||| |||| | ||| ||| | || | || |||||| Sbjct 24426 TGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA---T 24481 Query 54758 TTCATCACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTA 54817 | || |||||| || | ||| ||||| | ||| |||| ||| || | || |||| | Sbjct 24482 TGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAATTCGA 24541 Query 54818 GCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTC 54877 || || | ||| |||| ||||||||||| | || ||||| |||| |||| | Sbjct 24542 GCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGCTGCC 24601 Query 54878 AGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCT 54937 | ||||||||| || || || || ||| | || || || ||| || | Sbjct 24602 AATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTGAGAT 24661 Query 54938 ATTTTAATAGGATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGAT 54997 |||| | ||||| | | || ||||||||| || || | |||| | || || | Sbjct 24662 ATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCGCGCA 24721 Query 54998 GTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACATTTT 55056 |||||||| || || |||| ||| || ||| | ||||| |||||| ||||||| Sbjct 24722 GTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACATTTT 24780 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 52838 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTT 52897 || || |||||||||||||| ||||| ||||| ||||| |||| |||||||| Sbjct 22556 GTTCGGAGATAGTACATTCCTGTTTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 22615 Query 52898 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 52955 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 22616 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTAAGTGATTGACTCTGACAAA 22673 Query 52956 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 53015 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 22674 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 22733 Query 53016 TTTTATA 53022 |||| || Sbjct 22734 TTTTGTA 22740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593630983240800