Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq835 170 2e-37 seq378 118 9e-22 seq2154 93.3 4e-14 >seq835 Length=76541 Score = 170 bits (188), Expect = 2e-37 Identities = 587/892 (66%), Gaps = 44/892 (5%) Strand=Plus/Minus Query 57540 TTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCA 57599 |||||| | |||||||| || | | || |||||| ||||||| || || ||||| ||| Sbjct 30374 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 30315 Query 57600 TCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGAT--TCCC 57657 |||||||||| |||||| | || || | || ||| || ||| | | Sbjct 30314 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 30255 Query 57658 TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATG 57717 || | ||| || ||| | ||||| |||||||||||||| || || || || |||| Sbjct 30254 TCGGACAAT--GAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATG 30197 Query 57718 GTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGC 57775 | ||||| || || ||| | | | | || ||||| || | || || | | || || Sbjct 30196 GAATTGTCAATGAAAATCTCGCC--ATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGC 30139 Query 57776 GAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCT 57835 |||||||||||||||||||| | || || ||||| | || || ||| |||||||| | Sbjct 30138 TCGATGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTT 30079 Query 57836 ACTCATCGATACGTACGTGAAGGA--CAAC-GACGAGAAACGTAGACTGTTCAACGCGAT 57892 | | || ||||| ||| | || || |||| || | | | | ||||| |||||| Sbjct 30078 ATTGATTGATACATACATCAAAGATCCAACTGAAAAACAGCATTTACTGT---GCGCGAT 30022 Query 57893 CGAAACAATGCCCGCG-ATCGCCAAGAAGGCAGAGTGGTCAATCAAATG----GATAAAA 57947 |||||||| |||| | | |||| || ||| | ||| | | ||||| ||| || Sbjct 30021 TGAAACAAT-CCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAA 29963 Query 57948 AGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTC 58007 || ||| |||| || || || | | || || || ||||||||||| || || Sbjct 29962 AG----TATGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTT 29907 Query 58008 TTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 || || || || ||| | ||||||||| |||||||||| || ||||||| || || Sbjct 29906 TTCTCCGGATCATTCTGC-TCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACT 29848 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||| | || || || || || || ||| ||| ||||| || || Sbjct 29847 TTGCTTTTCAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGTCT 29788 Query 58127 AATGTACTCTCACATTGTCAATAAACCGAC-GCGGGATCGCATCTTGGACATTATCACCG 58185 |||||||| | | || ||||| | | | || || || || | || || ||| Sbjct 29787 GATGTACTCGAAACTGGTAAATAAGCTTCCAGAAGGCTCTATTCATGCA-ATCATTTCCG 29729 Query 58186 AGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTA 58245 | || || |||||| | || ||||| || | || || || | | | || | Sbjct 29728 ACGCCGTTATCATCGAACAAGAATTTGTACGAGATTCACTTCCAGTCGAGCTAATTGGAA 29669 Query 58246 TGAA--CAATGATTTGAT--GTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTC 58301 |||| ||| |||||| ||||| ||||| |||||||| || || || | || | Sbjct 29668 TGAATTCAA--GTTTGATGGGTCAA--TACATCGAGTTTGTGGCGGATCGATTGTTACAT 29613 Query 58302 GAACTGATTGGAG--AGC--GTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCT 58357 | || |||| | ||| || || ||| | ||||| ||||| | ||| || | Sbjct 29612 GCAC---TTGGCGTCAGCAAGTTATATCAA-GCTTCTAATCCCTTTGACTGGATGGATAT 29557 Query 58358 GATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATAT 58409 ||| || || | || || ||||||||||| || ||| ||| | |||||| Sbjct 29556 GATATCTCTGCAAGGAAAAACAAACTTTTTTGAGAAACGCGTTGGAGAATAT 29505 >seq378 Length=86116 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || ||||| || || | || || ||| | || Sbjct 295 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 354 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | || || || || |||||| ||||| | || || |||||| Sbjct 355 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 414 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || |||||||| || || || ||||| |||||||| || | ||||| ||| Sbjct 415 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 474 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTAG 31422 ||||| ||||| || || ||||||||||||||| | || | || ||||| Sbjct 475 ATTCAGAAAGAGTCTACGCTTCATCTGGTACTTCGTCTTCGTGGTGGTAG 524 >seq2154 Length=27549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| | || || ||| | ||| Sbjct 4084 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 4143 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || || || || ||||||||||| | || |||||||| Sbjct 4144 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 4203 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||| | || ||||| || ||||| ||||| ||| Sbjct 4204 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGAC 4239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445698364903200