Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq1791 196 2e-45 seq3774 165 3e-36 >seq1791 Length=616 Score = 196 bits (216), Expect = 2e-45 Identities = 417/614 (68%), Gaps = 19/614 (3%) Strand=Plus/Minus Query 33316 TGAACCGCACCGGGAATCGTGGAGGCTGGTTGGTTTAAGTTAATGCGGACACGTCAGCGG 33375 |||||||| ||||| || |||| | || |||| ||| | ||| ||| | || | Sbjct 616 TGAACCGCCCCGGGTTTCTCGGAGACCCTTTTGTTTGAGTCA-TGC---CACCTGGGCAG 561 Query 33376 CATTTCTGAGTTGTCTG-TAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGC 33434 | ||||||| ||| || ||| | || || || || | || || |||| |||| Sbjct 560 ACTCGGTGAGTTG-CTGATAATAGATGGCTTCTGCCTCGACCGGTGGAATATGACCGATT 502 Query 33435 GGTTCCATCAGCCGATGATGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACG 33494 || |||| ||| || | || ||| ||||| | ||||||| ||||||| |||| || || Sbjct 501 GGCTCCAGCAGGCGGCGGTGATTGAACCAGTCCACCCATTTCAGCGTTTCCAGCTCCACC 442 Query 33495 GATTCCCTCGTTTTCCAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTG 33554 | ||| || ||||| | || |||||||||| ||| | |||||| || || ||| Sbjct 441 GCCCCCCGTGTGGGCCAAGAG---CGTCGATGAATCACTTCAGCCTTGTAAAGACCATTG 385 Query 33555 ATCGTTTCGGCCAGCGCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATG 33614 || || || |||| ||||||||||| ||| || || ||||| || ||||| || Sbjct 384 ATGGTCTCAGCCAAGGCATTGTCGTAAGAGTCACCGACACTCCCGACCGATGGCTCAATA 325 Query 33615 CCGGCCTCAGCCAGCCGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAA 33674 ||||| || | || || ||| | |||||||| ||||| || || | ||| Sbjct 324 CCGGCTTCGACAAGACGCTCGGTATAGCGAATTGACACGTACTGCACGCCACGGTCACTG 265 Query 33675 TGATGAATCAAAGTC--CCGTCCTCGCCCGGTTGGCGGGCGTACAGCGCTTGTTCAAGTG 33732 || ||||| |||| || | || | | || | |||||||| || ||||| || |||| Sbjct 264 TGGTGAAT--GAGTCCACCCTGCTTGACTGGGCGACGGGCGTAAAGGGCTTGCTCCAGTG 207 Query 33733 CATCCAGAACAAAGTCCGTGGTCATCGACGAGCTG---ACCCGCCAGCCAACAATACGGC 33789 |||| || ||||| || ||| || || ||| ||| ||| || || || | Sbjct 206 CATCGAGTACAAAATC---GGTACGCGCTGAACTGGACACCTTCCAACCGACGATGAATC 150 Query 33790 GGGCGAACACGTCGATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACG 33849 |||| || || || || | ||| |||||||| | | || ||||| || ||| || | Sbjct 149 GGGCAAAGACATCAATGATGAAGGCCACGTAAACAAAACCCTGCCAGGTACTGACGTAGG 90 Query 33850 TAAAATCCGACACCCAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGT 33909 |||| ||||| ||||| || ||||| | |||||| ||||| |||||||| | | Sbjct 89 TAAAGTCCGATACCCATAGGGCGTTCGGGCACTCAGCCACAAACTGACGGTTGACATGAT 30 Query 33910 CCAGCGGGCGCGGC 33923 || |||||| |||| Sbjct 29 CCTGCGGGCACGGC 16 >seq3774 Length=612 Score = 165 bits (182), Expect = 3e-36 Identities = 311/451 (69%), Gaps = 5/451 (1%) Strand=Plus/Minus Query 34187 CGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTCGACCCCGAAGGTGTCGCGATGCTG 34246 ||||||||| || |||| |||||||| ||||||||||||||| ||| | ||| | | Sbjct 451 CGACGGGGCGATTGGCAACACCTTGCAAATCGGCTCGACCCCGTAGGACTGGCGGTTTTC 392 Query 34247 ATCAATGAAGGCCTTCAGGACTTGAAACGGCGGTCGAGCTCCGCCTGAGCGAAAAACGCG 34306 |||||| || | ||||| ||||| ||||||||||||||||||| || ||| | ||| Sbjct 391 ATCAATAAACGTCTTCATCGTTTGAATGGGCGGTCGAGCTCCGCCTGGGCAAAATAGGCG 332 Query 34307 CTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAGTTCCTTGACCTCGCGCTCCAAGGCT 34366 ||| | |||||||| | | |||| | | ||| |||||||| Sbjct 331 GAGGCCTTACGCAATATCTCGTTAGCTTGACGCAACTGACGGTTCTCACGCTCCAACAGC 272 Query 34367 TTGATGCGTTCACGCTCGGCCGTACTCACGCCATCGCGCTCTCCACGGTCGACCTC-GTT 34425 |||| || ||||| ||| | || |||| ||||| |||| || | || | ||| | | Sbjct 271 TTGACTCGCTCACGTTCGACTGTGCTCAGCCCATCACGCTGGCCGCTGTTGCGCTCAGAT 212 Query 34426 GCGCTTAACCCAATCCAACAGCGTCTGCGGCGTGCAGCCGATCATCGGCGCAATCGATTC 34485 || |||||| | | |||| ||||||||||||||| | || ||||| | Sbjct 211 TGGC-GAACCCACAGCCTTAATGTCTCGGGCGTGCAGCCGATCTTGGGGGCAATGGCACT 153 Query 34486 GACGGCCGCCCACATCGACGGGTGCTCGCTACGCTGCTCGCGTACCAGGCGCACTGCGCG 34545 || || |||||| |||| || ||| | | || ||| |||| | | || || Sbjct 152 GATGGTGGCCCACTGCGACTCGTACTCAGGAAGGTGTTCGAAAACCATCCTGATGGCCCG 93 Query 34546 CTCTCGGACTTCCGGGGAAAACTGCTTGGCTTCTGTTCATGGCTCCATTCTCTCAGAG-T 34604 ||| ||||| || |||||| ||| | | | | ||||| ||||||| |||||| || | Sbjct 92 CTCACGGACCTCTGGGGAATACTTC-GGTAGTTTTTTCATCGCTCCATCCTCTCAAAGAT 34 Query 34605 TGGAGCCTCC-ACAAACTCGGGGCGGTTCAG 34634 ||||| |||| | |||| ||||||||||||| Sbjct 33 TGGAGTCTCCGAGAAACCCGGGGCGGTTCAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170647253626700