Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq835 246 4e-60 seq500 223 4e-53 >seq835 Length=76541 Score = 246 bits (272), Expect = 4e-60 Identities = 605/908 (67%), Gaps = 21/908 (2%) Strand=Plus/Plus Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 ||||| || || ||||| || ||||| || |||||||||| || ||||| | ||||| Sbjct 29506 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATATCCATC 29565 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 | ||||| ||||| | | | | || | || | | || | | || | ||||| | Sbjct 29566 CAGTCAAAGGGATTAGAAGCTTGATATAACTTGCTGACGCCAAGTGCATGTAACAATCGA 29625 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || || || || || ||| ||||| |||||||||| || || | ||| Sbjct 29626 TCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGACT 29685 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 ||||| | | | |||||||||||| ||| || || | | || || | Sbjct 29686 GGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATGA 29745 Query 33537 ACGGTTTCTTCACTCGGTGGATG--TAATAAAT-GTTTAAA---CATCAAACATGCGAAA 33590 | | |||| |||| | || | | |||| | ||||| |||||| || Sbjct 29746 ATAGAGCCTTC------TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 29799 Query 33591 TCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATT 33650 || || || || || || || | ||| || | || || ||||| ||||| ||||| Sbjct 29800 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 29859 Query 33651 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCT 33710 | || || || || ||||||||||| || |||||||||||| || ||||||||||| Sbjct 29860 AATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCG 29919 Query 33711 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC-CACT-TTT 33768 || || |||||||| | | ||| ||| || | ||| | || ||| ||| ||| Sbjct 29920 ACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATTT 29978 Query 33769 GA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 | ||||| | || || || | || || || || ||||| || || | | || Sbjct 29979 CAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATG 30038 Query 33827 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33886 | ||||||| | |||||| | || ||||| ||||| | ||||| |||||| || Sbjct 30039 CTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTG 30098 Query 33887 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 || ||||| || || || ||||||||||| || |||| ||| |||| ||||| || || Sbjct 30099 TATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTC 30158 Query 33947 TGTAC--AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAAC 34004 | | ||| || | || | ||||||||| || |||||||||||||||||||| || Sbjct 30159 ACTGCTGAAATTCATG--GCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAG 30216 Query 34005 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 34064 ||||| || ||||| ||||| | | |||| | | || ||| ||| ||||| || Sbjct 30217 GCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATG 30276 Query 34065 TCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATA 34124 || | | ||| | |||||| | |||||||| ||||||||| || |||||||| Sbjct 30277 TCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATG 30336 Query 34125 TTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAGG 34184 | ||| || ||| | ||| || || || | ||||| | || |||||| | ||| Sbjct 30337 TCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTTTCTCGAAGA 30396 Query 34185 ATAGGTTC 34192 | |||||| Sbjct 30397 AAAGGTTC 30404 >seq500 Length=28399 Score = 223 bits (246), Expect = 4e-53 Identities = 1032/1624 (64%), Gaps = 24/1624 (1%) Strand=Plus/Plus Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 || |||| || |||||||| || | || || || || | || | ||| ||||||| Sbjct 23169 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 23228 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 23229 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 23288 Query 62803 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62862 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 23289 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 23348 Query 62863 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62922 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 23349 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATT--CTTT 23406 Query 62923 CTATTACAAACATGTT--CAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGC 62980 || |||| | || || |||||| | || |||| ||| || || || || || || | Sbjct 23407 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 23466 Query 62981 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 63040 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 23467 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 23526 Query 63041 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63100 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 23527 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 23586 Query 63101 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63156 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 23587 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 23644 Query 63157 TCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63216 | ||| ||||| ||| || || || ||| |||||| | | | Sbjct 23645 T--TTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 23702 Query 63217 ATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63276 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 23703 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 23762 Query 63277 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTC 63336 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 23763 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 23822 Query 63337 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63396 | |||||| || || || ||| | | ||||| | |||||| || || | || | Sbjct 23823 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 23882 Query 63397 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63456 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 23883 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 23942 Query 63457 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTC 63516 | || | | |||||||| ||| || || || | ||||| || ||| ||||| | Sbjct 23943 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 24002 Query 63517 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63576 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 24003 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 24062 Query 63577 CGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAA 63636 | ||| |||| | |||||| || ||||| || || |||||| |||| | ||||| Sbjct 24063 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 24122 Query 63637 AACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63696 |||| || | ||| | |||| ||||||||||| || | || |||| || |||| Sbjct 24123 AACACGACGATAATTGAGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 24182 Query 63697 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63756 |||| | |||| || | | | ||||| || | | | | || | || | || | Sbjct 24183 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 24242 Query 63757 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA-ACAATTTTGTTGTTT 63815 | || || || || || ||||||| ||| || || || | |||| ||| |||| || Sbjct 24243 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTT-CCATTC 24301 Query 63816 ATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCT 63875 | ||||| || ||||| |||| ||||||||| |||||||||| ||| ||||||| Sbjct 24302 ACACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCT 24361 Query 63876 CGTTCGTAAATAATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTA 63935 | || ||||| | |||||||| || || | | |||| || || ||| Sbjct 24362 CTATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCAC 24420 Query 63936 ATACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATA 63990 || ||| | |||| |||| | ||| ||| | ||| | || |||| Sbjct 24421 ATCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATA 24479 Query 63991 AATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTA 64050 | | || |||||| || | ||| ||||| | || |||| ||| || || || | Sbjct 24480 A---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAA 24536 Query 64051 TTCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGG 64110 ||| || || | ||| |||| ||||||||||| | || ||||| |||| | Sbjct 24537 TTCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTG 24596 Query 64111 CTGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCA 64170 |||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 24597 CTGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCT 24656 Query 64171 TAGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATAC 64230 || ||||| | ||||| | | || ||||||||| ||||| | |||| | || | Sbjct 24657 GAGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTC 24716 Query 64231 GAGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACA 64290 | | |||||||| || || |||| ||| || ||| | ||||| |||||| ||| Sbjct 24717 GCGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACA 24776 Query 64291 TTTT 64294 |||| Sbjct 24777 TTTT 24780 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 62076 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62135 || || |||||||||||||| ||||| ||||| ||||| |||| |||||||| Sbjct 22556 GTTCGGAGATAGTACATTCCTGTTTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 22615 Query 62136 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62193 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 22616 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTAAGTGATTGACTCTGACAAA 22673 Query 62194 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAG 62253 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 22674 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 22733 Query 62254 TTTTATA 62260 |||| || Sbjct 22734 TTTTGTA 22740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629721474088800