Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq835 251 7e-62 >seq835 Length=76541 Score = 251 bits (278), Expect = 7e-62 Identities = 522/762 (69%), Gaps = 29/762 (4%) Strand=Plus/Plus Query 13586 ATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13645 |||||| | ||| | ||| ||||| ||||| ||||| |||| ||| ||||| | ||||| Sbjct 29505 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATATCCAT 29564 Query 13646 AAAATCAAATGGATTTA----TTGACATAAACACTTTATCACAACCTAGTTCTAATAGTA 13701 | ||||| ||||| |||| |||| ||| | || || ||| | || | Sbjct 29565 CCAGTCAAAGGGATTAGAAGCTTGATATAA---CTTGCTGACG-CCAAGTGCATGTAACA 29620 Query 13702 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13761 ||| ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 29621 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 29680 Query 13762 TTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAA 13821 || |||| | || || |||||||| ||| || || || || ||| | Sbjct 29681 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGA---AATGA 29737 Query 13822 TTGTAATAATCT--CATTAGAAGGAGGATATTTTAGATGTTTAAAA---ATTAAACACGC 13876 ||| | ||| | || ||| | | |||| |||| | || | ||| || Sbjct 29738 TTGCATGAATAGAGCCTTCT--GGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGC 29795 Query 13877 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13936 ||| |||||||| || || ||||| | ||| || || || |||||||| | ||| || Sbjct 29796 AAAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGG 29855 Query 13937 CATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAAGAATATTC 13995 ||||||||||||||| || | ||||||||| | |||| ||||| ||||| || || |||| Sbjct 29856 CATCAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTC 29914 Query 13996 CCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTT--TTTTGTTCGATAT 14053 | || || || ||||| |||| | || |||| ||||||| || | ||| | ||| Sbjct 29915 CTTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCG--CA 29972 Query 14054 CCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAA 14113 |||||| ||||||| | ||| || ||| | ||||||||||| || | Sbjct 29973 CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAG 30032 Query 14114 TAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 14173 ||||| | || || | | | | |||||||||||||| | ||| ||||| ||| Sbjct 30033 TAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTC 30092 Query 14174 AGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTG 14233 |||||||| ||||| || || || ||||| || |||||||||| |||||| | || Sbjct 30093 CGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTG 30152 Query 14234 TACTTC-CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAA 14292 || || | | |||| | ||| | ||||||||| || || |||||||| ||||||| Sbjct 30153 AACCTCACTGCTGAAAT-TCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAA 30211 Query 14293 AAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14334 | || ||||| | || ||| ||||||| | || |||||||| Sbjct 30212 AGAAGGCCAACACGTGTTTGATAAAGTGT--CT-TTCATTGT 30250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479654781514000