Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq835 271 7e-68 >seq835 Length=76541 Score = 271 bits (300), Expect = 7e-68 Identities = 525/759 (69%), Gaps = 23/759 (3%) Strand=Plus/Plus Query 13374 ATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCAT 13433 |||||| | ||| | ||| ||||||||||| ||||| |||| ||| ||||| | ||||| Sbjct 29505 ATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATATCCAT 29564 Query 13434 AAAATCGAATGGATTTG----TTGACATAAACACTTTATCACAACCTAGTTCTAATAATA 13489 | || || ||||| | |||| |||| ||| | || || ||| | ||| | Sbjct 29565 CCAGTCAAAGGGATTAGAAGCTTGATATAA---CTTGCTGACG-CCAAGTGCATGTAACA 29620 Query 13490 ATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTT 13549 ||| ||| || | |||||| || |||||| ||| ||| ||||||| || ||||| | Sbjct 29621 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 29680 Query 13550 TTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 || |||| | || || |||||||| ||| || || || ||| || || Sbjct 29681 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTG 29740 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAA--AAATTAAACACGCAAA 13667 | |||| | | | | | || ||||| | || | | || | ||| ||||| Sbjct 29741 CATGAATAGAGCCTTCTGGA--AGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAA 29798 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||||||| || || ||||| | ||| || || || |||||||| | ||| ||||| Sbjct 29799 GTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCAT 29858 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAAGAATATTCCCT 13786 |||||||||||| || | ||||||||| | ||| |||||||||||| || || ||||| | Sbjct 29859 CAATCCTCGTTTCTTCAGCCAAAATATAG-AGCAGAATGATCCGGAGAAAAAGATTCCTT 29917 Query 13787 CAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGC-TTTTTTGTTTGATATCCAT 13845 | || || ||||| |||| | || |||| ||||||| || | |||| | | |||| Sbjct 29918 CGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA-CCAT 29976 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||||| | ||| || ||| | |||||||| || || | |||| Sbjct 29977 TTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAA 30036 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || | | | | |||||||||||||| | ||| ||||| ||| ||| Sbjct 30037 TGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAG 30096 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACC 14025 ||||| |||||||| || || ||||| || ||||| |||| |||||| | || ||| Sbjct 30097 TGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACC 30156 Query 14026 TC-CGAGTAAAATCTTTCTGCCAAG-TTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 || | | ||| || || | || |||||||| ||||| |||||||| |||||||| | Sbjct 30157 TCACTGCTGAAA--TTCATGGCGAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGA 30214 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGT 14122 | ||||| | || ||| ||||||| | || |||||||| Sbjct 30215 AGGCCAACACGTGTTTGATAAAGTGT--CT-TTCATTGT 30250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478515755384400