Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq378 102 8e-17 seq3650 89.7 5e-13 seq6259 86.0 6e-12 >seq378 Length=86116 Score = 102 bits (112), Expect = 8e-17 Identities = 144/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA--GTCTTCGAGTTGTTTAC 143045 || |||||||| || ||||||||||| | || | | ||| |||||| |||||||||| Sbjct 263 GTTGATTCTTTCTGGATGTTGTAATC-CGCAA-GCGTTCGTCCGTCTTCTAGTTGTTTAC 206 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | || ||||||||||||||||||| ||||| || ||||| ||||| || || | Sbjct 205 CGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTCGCCT 146 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| | | || ||||| | ||| | || || || ||||| | Sbjct 145 TCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTCAAGG 86 Query 143166 TTTTTACGAATATTTGCAT 143184 |||| || ||||| ||||| Sbjct 85 TTTTCACAAATATCTGCAT 67 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||| | || | ||||| ||||| ||||| || ||||||||||| Sbjct 521 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 462 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| |||||| ||||||||||| ||| | || ||||||||||| || ||||| Sbjct 461 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGA 402 Query 143078 ATGCCTTCTTTGTC 143091 || ||||||||||| Sbjct 401 ATTCCTTCTTTGTC 388 >seq3650 Length=4340 Score = 89.7 bits (98), Expect = 5e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| ||||| ||||||||||||||||||| ||||| || ||||||||||| | Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGA 60 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || |||| | || | |||||| | | || ||||| | ||| | ||||| Sbjct 61 ATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTT 120 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| || || || ||||| Sbjct 121 CCAGTAAGCGTTTTCACAAAAATCTGCAT 149 >seq6259 Length=113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 ||||| || | || |||||||| || ||||||||||| | || | |||||| Sbjct 110 ACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCT 51 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTC 143085 |||||||| ||||| ||||||||||||||||||| ||||| || ||||| Sbjct 50 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506937016927200