Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq378 156 1e-32 seq835 125 2e-23 seq3650 120 7e-22 seq469 118 2e-21 seq6259 96.9 8e-15 seq3863 86.0 1e-11 >seq378 Length=86116 Score = 156 bits (172), Expect = 1e-32 Identities = 163/214 (76%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| ||||| | ||||| ||||||||||| || || || | || || | ||||| Sbjct 507 AAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCAAGCGTGCGTCCGTC 448 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| |||||||| || ||||||||||| | || || || ||||| ||||||||||| || Sbjct 447 TTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAGGAATTCCTTCTTTGTC 388 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||| ||||| || || ||||| || | ||||| || ||| || || | |||||||| Sbjct 387 CTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCACTTCCAACGTAATAGT 328 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 || ||||| || || || ||||| || |||||| Sbjct 327 TTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 294 Score = 129 bits (142), Expect = 1e-24 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||||||||| || || || || | || |||| ||||||||||||||| Sbjct 269 TGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGCGTTCGTCCGTCTTCTAGTTGT 210 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || || | || ||||||||||| |||||||| || ||||| ||||| Sbjct 209 TTACCGGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGATCTTC 150 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 || || || || || | || || | || || || | || ||||| || ||||| Sbjct 149 GCCTTCACGTTGTCAATAGTGTCTGATGACTCGACTTCCAAAGTTATAGTTTTTCCAGTC 90 Query 104537 AGTGTTTTTACAAATATCTGCATT 104560 | ||||| ||||||||||||||| Sbjct 89 AAGGTTTTCACAAATATCTGCATT 66 >seq835 Length=76541 Score = 125 bits (138), Expect = 2e-23 Identities = 386/590 (65%), Gaps = 13/590 (2%) Strand=Plus/Minus Query 268703 TTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTTGCT 268762 ||||| ||||||| ||||| || ||| || ||| ||||| || | || | || Sbjct 30374 TTTGTCTTATTTCCGATACAACAATCTGAGATTTGGGACATGTATAAGAAAGCAGAGGCA 30315 Query 268763 TCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAATTTA 268822 |||||||| | ||||||| | ||| || ||||| | | || ||| ||| || Sbjct 30314 AGCTTTTGGACCGCAGAAGAAATCGATTTGGTGCATGACATGAATGACTGGCTTAATATA 30255 Query 268823 AAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGT 268882 | |||||| ||||| | | | || || ||||||| |||||||| Sbjct 30254 TCGGACAATGAAAGACACTTTATCAAACACGTGTTGGCCTTCTTTGCAGCCAGTGATGGA 30195 Query 268883 ATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGA 268942 || || || |||||||| | ||| ||| | ||||| ||||| || ||||| || Sbjct 30194 ATTGTCAATGAAAATCTCGCCATGAATTTCAGCAGTGAGGTTCAGATCCCCGAAGCTCGA 30135 Query 268943 TGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTA 269002 || ||||||||||| || || || ||||||||||| || || || |||| |||| Sbjct 30134 TGCTTTTACGGATTTCAAATTGCAATAGAAAATATACACTCGGAAGTGTATTCGTTATTG 30075 Query 269003 ATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT----TCTATGAG 269058 || ||||| || || | ||| |||| | |||| | |||| || | || Sbjct 30074 ATTGATACATACATCAAAGAT-CCAACTGA---AAAACAGCATTTACTGTGCGCGATTGA 30019 Query 269059 AACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGG-ATAAACGATAGCG 269117 ||| || || || | || ||| | ||||||| |||||||| | | | || Sbjct 30018 AACAATCCCGTGCGTTACCAATAAAGCACAATGGGCGTTGAAATGGTGCGATCCAAAGTA 29959 Query 269118 CGCCT--TACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGG 269175 |||| | | |||||| | || || ||||| || || ||||| || || || || || Sbjct 29958 TGCCTCGTTTGCAGAAAGAGTGGTAGCCTTTGCGGCCGTCGAAGGAATCTTTTTCTCCGG 29899 Query 269176 GTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGA-TTAACTTTCT 269234 || || | |||| |||||| |||||||| |||| | ||||| ||| || |||| | Sbjct 29898 ATCATTCTGCTCTATATTTTGGCTGAAGAAACGAGGATTGATGCCTGGACTTTGCTTT-T 29840 Query 269235 CTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGT 269284 | || || | || || | || ||||| |||| || ||||| || ||| Sbjct 29839 CAAATGAGCTCATCAGTCGTGATGAAGGACTACATTGTGACTTTGCATGT 29790 >seq3650 Length=4340 Score = 120 bits (132), Expect = 7e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||||||||| || || || | || ||||||||||| ||||||||||| || ||| Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGA 60 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || |||||||| || | || || || || || || | || || ||||| Sbjct 61 ATCTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTT 120 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| ||||| |||||||| Sbjct 121 CCAGTAAGCGTTTTCACAAAAATCTGCAT 149 >seq469 Length=169936 Score = 118 bits (130), Expect = 2e-21 Identities = 115/143 (80%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 104392 TAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGG 104451 |||||| | ||||||||| ||||||||||| ||||||||||| | ||||| |||||||| Sbjct 159209 TAGAGTACGACCGTCTTCAAGTTGTTTTCCGGCAAAAATTAGACGTTGTTGGTCAGGAGG 159150 Query 104452 TATTCCTTCTTTATCCTGAATCTTTGCT-TTTACATTTTCTACGGTAT-CGCTAGGTTCT 104509 |||||||| || || |||||| ||||| || ||||| || | || | |||| | |||| Sbjct 159149 AATTCCTTCCTTGTCTTGAATC-TTGCTCTTGACATTGTCAATCGTGTCCGCT-GATTCT 159092 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||| || || || Sbjct 159091 ACTTCGAGTGTAATTGTTTTTCC 159069 >seq6259 Length=113 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || |||| || || || ||||||||||| || || || || | ||||| | |||||| Sbjct 113 AGCACTAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCT 54 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTC 104460 ||||||||||||||||| || || || | || ||||||||||| |||||||| Sbjct 53 TCTAGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTC 1 >seq3863 Length=215 Score = 86.0 bits (94), Expect = 1e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 |||||||||||||| || || || | || ||||||||||| |||||||| || ||||| Sbjct 1 AGTTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGG 60 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || || || || | || || | || || || | || || || || Sbjct 61 ATCTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTC 120 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || ||||| || |||||| Sbjct 121 CCAGTCAGCGTCTTAACAAAAATTTGCATT 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151218274514680