Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq221 167 1e-36 seq1306 120 2e-22 >seq221 Length=1203 Score = 167 bits (184), Expect = 1e-36 Identities = 439/661 (66%), Gaps = 17/661 (3%) Strand=Plus/Minus Query 8110 GTAGCCGGCATCGGCTGAGACAAATTGCTCCTCTCCATGCAGCAGATTACCCAGCTGATT 8169 ||| || || ||||| |||| | | ||||| || |||||||| || | | ||| | Sbjct 735 GTAACCTGCGTCGGCGCAGACTACGTTTTCCTCGCCGTGCAGCAGTTTGGCAACCTGCGT 676 Query 8170 GAGGTCATGCTCGTTGGCCGCGGTGGTGACCAGGCTGTGGGTCAGGCCACTCTTGGCATC 8229 || ||| | | |||||||| || |||| |||||| |||||| || | | || Sbjct 675 GACGTCTGCCACATTGGCCGCTGTTACTACCACGCTGTGCACCAGGCCTGACTCGTCGTC 616 Query 8230 GACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCTGATGCAT 8289 | | || ||||| ||||| ||| || | |||| || ||||||||||| |||||||| Sbjct 615 GGCGCCGATGTGAGCCTTAGCGCCGAAATAGTACTGGTTACCTTTCTTGGTTTGATGCAT 556 Query 8290 CTCCGGATCGCGTTGCTGC--TCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATGATGGTG 8347 ||| |||||||||| ||| ||||||||||||||||| ||||| || | ||| | ||| Sbjct 555 CTCAGGATCGCGTT--TGCCATCTTTGTTCTTGGTCGAACTGGGCGCGTGAATCAGCGTG 498 Query 8348 GCATCGACCAAGGTGCCTTGAGTCATCATGACGCCTGCTTCGGCCAGCCAGCGATTGAT- 8406 |||||||| | |||||||||| || | | || ||| |||| | | ||| || Sbjct 497 GCATCGACGATGGTGCCTTGACGCAACGACAACCCACGGTCGCCCAGATAACCATTAATT 438 Query 8407 -GGTCTTGAACAATTGGCGG--GCCAGTTGATGCTGCTCCAGCAGGTGGCGGAAATTCAT 8463 | | ||| | ||| |||| | |||| ||||| || | ||||| || | Sbjct 437 ACGCCGAGAA----TCCCGGTCGCCAACTCGTGCTTTTCCAGAAGACGACGGAAGTTGAG 382 Query 8464 GATGGTGGTGCGGTCCGGCAAGGCGCTATCCAGGGATAACCGGGCAAACAGACGCATGGA 8523 |||||||| ||| || || |||| |||||| | | | |||| |||||| | Sbjct 381 AATGGTGGTTTCGTCTGG-AATGCGC--TCCAGGCTCAGGCCTGAAAACTGACGCAGGAT 325 Query 8524 GGCGATTTCGTACAGAGCATCTTCCATCGCGCCATCGCTCAGGTTGTACCAATGCTGCAT 8583 || | || ||||| || ||||||||||| |||||| | | |||| | |||||| Sbjct 324 GGTCGTCTCATACAGCGCTTCTTCCATCGCCGGATCGCTGTAGCCGAACCAGTTCTGCAT 265 Query 8584 GCAG-TGAATGCGTAGCATGGTTTCCAGCGGATAAGGTCGCCGGCCATTACCAGCCTTGG 8642 ||| |||| || ||||| | ||| || || | |||||||| | | || | Sbjct 264 -CAGATGAACACGCAGCATCGCCATCAGTGGGTAGGCGGGCCGGCCACCTTCTCCTTTTG 206 Query 8643 GGTAAAACGGCTCGATGACTTCCACCATGTTTTGCCATGGCAGAATCTGCTCCATGCGGG 8702 | ||| | ||||| || | | | || || ||| |||| | ||| ||||| | Sbjct 205 GATAATAGGGCTCAATCAGGGCAATCAAACCTTTCCAGGGCACCACCTGATCCATCTCGA 146 Query 8703 ACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGG 8762 || ||| | || || | |||||| |||||| | | | || ||||||||||| Sbjct 145 TCAGGAACAATTCCTTACGGGTCTGCTTGCGCTTGCCGGCATACTCGGCGTCGGCGAAGG 86 Query 8763 T 8763 | Sbjct 85 T 85 >seq1306 Length=1223 Score = 120 bits (132), Expect = 2e-22 Identities = 115/145 (79%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 8223 TGGCATCGACACCAATGTGGGCCTTCATGCCAAAGTGCCACTGATTGCCTTTCTTGGTCT 8282 |||| || |||||||||||||||||||| ||||||||||| |||||||||||| ||| || Sbjct 571 TGGCGTCTACACCAATGTGGGCCTTCATCCCAAAGTGCCATTGATTGCCTTTCCTGGCCT 630 Query 8283 GATGCATCTCCGGATCGCG-TTGCTGCTCTTTGTTCTTGGTCGAGCTGGGTGCCTCAATG 8341 |||||||||| ||||| || |||| ||| ||||||| |||| || || | || Sbjct 631 GATGCATCTCAGGATCACGCTTGC-CTTCTCGGTTCTTGACCGAGGGCGGCGCGGCGATC 689 Query 8342 ATGGTGGCATCGACCAAGGTGCCTT 8366 | ||| || ||||| | ||||||| Sbjct 690 AGGGTAGCGTCGACGATAGTGCCTT 714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303190075759410