Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq835 165 9e-36 >seq835 Length=76541 Score = 165 bits (182), Expect = 9e-36 Identities = 615/951 (65%), Gaps = 24/951 (3%) Strand=Plus/Plus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||| ||||| |||||||| | |||||| | || | || |||| | ||| || Sbjct 29442 TTAGAAATCTGCATCTAAAGTGAAAACTTGCTCCT-TTGCAGAGACACCAACACCAGATT 29500 Query 21187 TTG-ATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 | | ||| || | ||| | ||| || ||||| ||||| ||||||| || ||||| | Sbjct 29501 TCGCATATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATAT 29560 Query 21246 CCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATA 21305 |||| | ||||| ||||| || || | ||| || | || ||| | ||| | Sbjct 29561 CCATCCAGTCAAAGGGATTAGAAGCTTGATATAACTTGCTGACGCCAAGTGCATGTAACA 29620 Query 21306 ATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 ||| ||| || ||||| || || ||||||| ||| || ||||||| || || | | Sbjct 29621 ATCGATCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCT 29680 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT 21425 || ||||| | | | | ||| || ||| || ||||| || ||| || | Sbjct 29681 CGACTGGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGAT-T 29739 Query 21426 TTATTATCCTAGATG-TACTAGGGGGATACAATAATTGTTTAAA---CATCAAACATGCA 21481 || | |||| | || | | || || |||| | ||||| ||||||| Sbjct 29740 GCATGAA--TAGAGCCTTCTGGAAGCTTATT-TACCAGTTTCGAGTACATCAGACATGCA 29796 Query 21482 AAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGC 21541 || |||||||| | |||||||| | ||| || | ||||| ||||| | || ||| Sbjct 29797 AAGTCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGC 29856 Query 21542 ATTAATCCTCTCTTTTTTAACCAAAATATTGACGCA-AATGCTCCTGAAAAGAAAATGCC 21600 || ||||||| || || | ||||||||| || ||| |||| ||| || || || || || Sbjct 29857 ATCAATCCTCGTTTCTTCAGCCAAAATATAGA-GCAGAATGATCCGGAGAAAAAGATTCC 29915 Query 21601 CTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAG-ATTCTTT--ATCCAATAT 21657 || ||||| ||||| || || | || ||| | | | | || |||| ||| | Sbjct 29916 TTCGACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTTTGGATCGCA--- 29972 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 |||||| ||||||| ||| || | ||| || ||||| ||||| || | Sbjct 29973 CCATTTCAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAG 30032 Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 | ||| | ||||||| | ||| | ||| ||||| ||| Sbjct 30033 TAAATGCTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTC 30092 Query 21778 AGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTG 21837 || |||||||||||||| || || |||||||||||||| |||| || || | || Sbjct 30093 CGAGTGTATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTG 30152 Query 21838 AACCTC-GGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||||| | |||| || || | |||||||| || |||||||||||||| |||| Sbjct 30153 AACCTCACTGCTGAAATTCATG-GCGAGATTTTCATTGACAATTCCATCACTGGCTGCAA 30211 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 | || ||||| | | ||| ||||| | || ||| || || | || || ||| || Sbjct 30212 AGAAGGCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTC-- 30269 Query 21957 ATAAATCTTTTG--ATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTT 22014 || || | || ||||| | |||||| | ||||||||||| || || || || Sbjct 30270 ATTCATGTCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTT 30329 Query 22015 ATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGTT 22065 |||||| ||| || ||| | | ||| ||||||| ||||| | ||| Sbjct 30330 ATACATGTCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTT 30380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531819618640400