Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq835 264 1e-65 seq500 192 7e-44 >seq835 Length=76541 Score = 264 bits (292), Expect = 1e-65 Identities = 598/891 (67%), Gaps = 21/891 (2%) Strand=Plus/Plus Query 33019 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33078 ||||| || || ||||| || ||||| || |||||||||| || ||||| | ||||| Sbjct 29506 TATTCTCCAACGCGTTTCTCAAAAAAGTTTGTTTTTCCTTGCAGAGATATCATATCCATC 29565 Query 33079 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33138 | ||||| ||||| | | | | ||| | || | | || | | || | ||||| | Sbjct 29566 CAGTCAAAGGGATTAGAAGCTTGATATAACTTGCTGACGCCAAGTGCATGTAACAATCGA 29625 Query 33139 TCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 33198 ||||| || || || || ||| ||||| |||||||||| || || | ||| Sbjct 29626 TCCGCCACAAACTCGATGTATTGACCCATCAAACTTGAATTCATTCCAATTAGCTCGACT 29685 Query 33199 GGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCTA 33258 ||||| | | | |||||||||||| ||| || || || | || || | | Sbjct 29686 GGAAGTGAATCTCGTACAAATTCTTGTTCGATGATAACGGCGTCGGAAATGATTGCATGA 29745 Query 33259 ACGGTTTCTTCACTCGGTGGATGCAA---TAAATGTTTAAA---CATCAAACATGCGAAA 33312 | | |||| |||| || || |||| | ||||| |||||| || Sbjct 29746 ATAGAGCCTTC------TGGAAGCTTATTTACCAGTTTCGAGTACATCAGACATGCAAAG 29799 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || || || || || | ||| || || || || ||||| ||||| ||||| Sbjct 29800 TCACAATGTAGTCCTTCATCACGACTGATGAGCTCATTTGAAAAGCAAAGTCCAGGCATC 29859 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | || || || || ||||||||||| || ||||||||| || || ||||||||||| Sbjct 29860 AATCCTCGTTTCTTCAGCCAAAATATAGAGCAGAATGATCCGGAGAAAAAGATTCCTTCG 29919 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATC-CACT-TTT 33490 || || |||||||| | | ||| ||| || | ||| | || ||| ||| ||| Sbjct 29920 ACGGCCGCAAAGGCTACCACTCTTTCTGCAAACGAGGCATACTT-TGGATCGCACCATTT 29978 Query 33491 GA--GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | ||||| | || || || | || || || || ||||| || || | | || Sbjct 29979 CAACGCCCATTGTGCTTTATTGGTAACGCACGGGATTGTTTCAATCGCGCACAGTAAATG 30038 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 | ||||||| | |||||| | || ||||| ||||| | ||||| |||||| || Sbjct 30039 CTGTTTTTCAGTTGGATCTTTGATGTATGTATCAATCAATAACGAATACACTTCCGAGTG 30098 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 || ||||| || || || ||||||||||| || |||| ||| |||| ||||| || || Sbjct 30099 TATATTTTCTATTGCAATTTGAAATCCGTAAAAGCATCGAGCTTCGGGGATCTGAACCTC 30158 Query 33669 TGTAC--AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAAC 33726 | | ||| || | || | ||||||||| || ||||| |||||||||||||| || Sbjct 30159 ACTGCTGAAATTCATGGCG--AGATTTTCATTGACAATTCCATCACTGGCTGCAAAGAAG 30216 Query 33727 GCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATA 33786 ||||| || ||||| ||||| | | |||| | | || ||| ||| ||||| || Sbjct 30217 GCCAACACGTGTTTGATAAAGTGTCTTTCATTGTCCGATATATTAAGCCAGTCATTCATG 30276 Query 33787 TCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATG 33846 || | | ||| | |||||| | |||||||| ||||||||| || ||||||||| Sbjct 30277 TCATGCACCAAATCGATTTCTTCTGCGGTCCAAAAGCTTGCCTCTGCTTTCTTATACATG 30336 Query 33847 TTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTT 33897 | ||| || ||| | | ||| || || || | ||||| | || |||||| Sbjct 30337 TCCCAAATCTCAGATTGTTGTATCGGAAATAAGACAAAGCGGTTCGGATTT 30387 >seq500 Length=28399 Score = 192 bits (212), Expect = 7e-44 Identities = 1023/1623 (63%), Gaps = 22/1623 (1%) Strand=Plus/Plus Query 62632 CGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAATG 62691 || |||| || ||||| || || | || || || || | || | ||| ||||||| Sbjct 23169 CGAAATACATCGTTTCAAAAATTTCTTTGTTGAGCTCGCGAGCAGCTTTGCTTTCAAATG 23228 Query 62692 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62751 || | | | || | ||||| || || | |||||||| || || || || |||| || Sbjct 23229 GAAGACTCATCAGTAAAAACGTATCGGCAAGACCTTGAACGCCGATTCCAATCGGTCGAT 23288 Query 62752 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 62811 ||| || ||| | || ||||| ||||| ||||||||||| | ||| || ||||| | Sbjct 23289 GTCGCTGATTGCTCACTTGTGCTTCAGGAATCGGATAATAATTGAGATCAATGATTTTGT 23348 Query 62812 TGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCAT 62871 |||||||| | || | ||| | || | | ||| ||| | |||| | | Sbjct 23349 TGAGATTTTTCGTAACGATTTTTGTGATTTCGTATAATTTTGCAAACTGAAATT--CTTT 23406 Query 62872 CTATTACAAACATGTT--CAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGC 62929 || |||| | || || ||| || | || |||| ||| || || || || || || | Sbjct 23407 CTGATACACAAATTTTGACAATGCGATGGAAGCCAAATTGCATACTGCCACTTCTTTGGA 23466 Query 62930 ATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTG 62989 || | || | || || ||| ||| ||||| || | || ||||| | ||| || Sbjct 23467 GTCTGAGTACTCGATGATTTCACAGCAGAGATTGCTTGATCGAATGGTTCCAAGATTCTG 23526 Query 62990 TTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAAT 63049 ||||| || ||||| || || || ||||| || | || || || || ||||| Sbjct 23527 CTGATTGGATTTACGATTACAAGCGTCTTTGTAAAGCATATACGGCGTTCCGGTCTCAAT 23586 Query 63050 CTGAGATTCTATAATCGCTTTCCAGACGACT-CGAGCCTTTATTATAGATTTGT---ATC 63105 |||| || | ||| || ||| | | | | | |||| | || | || Sbjct 23587 CTGACTATCCAAAATGGCAAACCACA--ATTGCTGGGCTTTGACAGTCTTTCGGGCAATG 23644 Query 63106 TCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCA 63165 | ||| ||||| | ||| || || || ||| |||||| | | | Sbjct 23645 T--TTTGAGACTCGTACTTTTCATATAACGCATCAAATTCGCTTCCCCATGTCTCATAAA 23702 Query 63166 ATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCA 63225 || ||| || | |||||| | || ||| ||| || || | ||| ||||||| Sbjct 23703 GTCGTGGAGCCTCGTTCGGACAGAATAAACTCCATTCTTGGTTGTCTTCCACACGTTTCA 23762 Query 63226 TAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTC 63285 |||| ||||| || ||||||||||| ||| | ||||| | || ||| || |||| Sbjct 23763 TAAACAGATCGGGGATCCAAAGAGCATAAAACAAATCTCGAGCTCGATGGAGTTCATTTC 23822 Query 63286 CTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATA 63345 | |||||| || || || ||| | | ||||| | |||||| || || | || | Sbjct 23823 CATGATTCTTACGTAGTTCCAGAAACTCAAAGATATCCGCATGCCAGGGCTCTAGATAAA 23882 Query 63346 TGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTAT 63405 | || | | || ||| || || || ||||| | ||||| ||| |||| ||| Sbjct 23883 TTGCAAAAGACCCTTTCCGCTTCCCACCACCTTGATCAACGTATCGAGCTGTGTCATTGA 23942 Query 63406 AAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTC 63465 | || | | |||||||| ||| || || || | ||||| || ||| ||||| || Sbjct 23943 ACACCCGAAGCATTGGAACAATTCCATTCGAACTTCCATTCGTCCCGCGAATATAACTGT 24002 Query 63466 CACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATG 63525 ||| |||||||| ||| | || || || || ||| || || || | | Sbjct 24003 TGGTGGAGCGAATATTGGAAATACTGACGCCAATACCGCCAGCCCACTTTGAAATACACG 24062 Query 63526 CGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAA 63585 | ||| |||| | |||||| || || || || || |||||| |||| | ||||| Sbjct 24063 CACATTGTTTCAGCGTGTCGTAAATGCCGTCGATAGAATCATCTTGCATGGATAATAGAA 24122 Query 63586 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 63645 |||| || | ||| | ||| ||||||||||| || | || |||| || |||| Sbjct 24123 AACACGACGATAATTGAGGTCGAGGCGTTCCCGCATTGAAAAGCGTCGGAGTTGCATGCG 24182 Query 63646 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGAT 63705 |||| | |||| || | | | ||||| || | | | | || | || | || | Sbjct 24183 TAAAGAACTTTTGTGACATGTGTTCATACGTTTCCAAAACGGCATCCAAATTCTCTTTGT 24242 Query 63706 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 63765 | || || || || || ||||||| ||| || || || | |||| | || || | Sbjct 24243 GTATGCCGACAGCCACTCGCATTATCATATGTTGTGGGCGTTCACACACTTTTCCATTCA 24302 Query 63766 TTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 63825 ||||| || ||||| |||| ||||||||| |||||||||| ||| |||||||| Sbjct 24303 CACGCAACAGATACGATTTCTCCAGAGTTTTAAAGCCAAAATAGTCGTAATCAAAGTCTC 24362 Query 63826 GTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGA 63885 || ||||| | || ||||| || || | | |||| || || ||| | Sbjct 24363 TATCACCGATAATGGCGGAATTGAGAGCTTCTTTGTTCTCCATAACAAT-TCGATGCACA 24421 Query 63886 TACTTG--AAATAATCGGAGAATG---TTTCCCATTTTTAGGATTAACATAGTTGAATAA 63940 | ||| | |||| |||| | ||| ||| | ||| | || ||||| Sbjct 24422 TCGTTGGCGATTAAT-GGAGCGGGTACTTTGGTGGTTTCGTGCTTATTTTCGTAAAATAA 24480 Query 63941 ATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTAT 64000 | || |||||| || | ||| ||||| | || |||| ||| || | || || Sbjct 24481 ---TTGAATGTTTTCACTGAAGACTTTGTTTGTATTTTTATGTAAATTGGAAATAGCAAT 24537 Query 64001 TCTGGCGGCTAGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGC 64060 || || || | ||| |||| ||||||||||| | || ||||| |||| || Sbjct 24538 TCGAGCAGCCAATTTGGAGAAATCGGGATGTTGTGTGCTGCAGTAAGCTGCGGTTTCTGC 24597 Query 64061 TGCCAGAGTGTCCAATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120 ||||| ||||||||| || || || || ||| | || ||| || ||| Sbjct 24598 TGCCAATTCGTCCAATTCCGATGTGGTGACGCCCGGATACACGCCAGCAATCACTTTCTG 24657 Query 64121 AGCTATTTTAATAGGATCTATATGATCCGTGTTTAAGCCATAACATAATTTTCTAATACG 64180 || ||||| | ||||| | | || ||||||||| || || | |||| | || || Sbjct 24658 AGATATTTGGACGGGATCAACGTATTCTGTGTTTAAGTTGTAGCAGAGTTTTGTGATTCG 24717 Query 64181 AGACGTGATTTTATCAAACATGACATTTTCCTTGTATCCATTTCGTTTAATGACAAACAT 64240 | |||||||| || || |||| ||| || ||| | ||||| |||||| |||| Sbjct 24718 CGCAGTGATTTTGTCGAATTTGACGACTTCTTTTCGTCCGTCACGTTTGATGACATACAT 24777 Query 64241 TTT 64243 ||| Sbjct 24778 TTT 24780 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 62025 GTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTC 62084 || || |||||||||||||| ||||| ||||| ||||| |||| |||||||| Sbjct 22556 GTTCGGAGATAGTACATTCCTGTTTTGAGACCTTTTTTCCATGCGTAGAAATGCATCGAA 22615 Query 62085 GTTAGTTTGGAATAAC--TCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGA 62142 || ||||| | | || |||| || || || || ||||| | |||||||| ||| | Sbjct 22616 GTGAGTTT--ACTGACAGTCGGGTCGGCAATGTGAATATTAAGTGATTGACTCTGACAAA 22673 Query 62143 TGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAG 62202 || | ||||| | || |||||||| | | |||| |||||| |||||||||| | Sbjct 22674 TGTACGCTCCTCGATCGGCAGCCATGTCCAAAATCGCCTTTTGCTTGATTTCCCAAACTG 22733 Query 62203 TTTTATA 62209 |||| || Sbjct 22734 TTTTGTA 22740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622852122683600