Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq10975 131 1e-25 seq378 125 5e-24 seq155 122 6e-23 seq67 113 3e-20 seq1709 96.9 2e-15 >seq10975 Length=333 Score = 131 bits (144), Expect = 1e-25 Identities = 86/95 (91%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 225 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 284 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 285 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 319 >seq378 Length=86116 Score = 125 bits (138), Expect = 5e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||| |||||| || ||| || ||||| |||||||| | Sbjct 523 TACCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCG 464 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | ||| |||| || | |||||| |||||||| ||||| ||||| || || | | Sbjct 463 CAAGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGGTCTGGAG 404 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || ||||||||| | || ||||||| | ||| | Sbjct 403 GAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCCA 344 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| || ||||||||||| || |||| || || || || || ||||| Sbjct 343 CTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCAT 295 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | |||||| || | || || || || || ||||||| Sbjct 297 CATT-CCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAAT 239 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| |||| |||| |||||| ||||| || || || ||||| ||||| | Sbjct 238 CCGCAAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAG 179 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||| |||||| || || |||||| || | | ||| ||| | Sbjct 178 GAGGAATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACT 119 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || |||||||| || |||||||||||||| ||||||||||| Sbjct 118 CGACTTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCAT 67 >seq155 Length=319 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||| ||||||||| ||||||||||| || |||||| | Sbjct 211 AAGCCCGTTCCCTTGGCTGTGGGTTCGCTAGACAGTAGATAGGGACAGTGGGAATCTCAT 270 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||| ||||||||||| Sbjct 271 TAATCCATTCATGCGCGTCACTAGTTAGATGACGA 305 >seq67 Length=833 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 123 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 182 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||||| ||| Sbjct 183 ACTTATATTTAGCTTTA 199 >seq1709 Length=16563 Score = 96.9 bits (106), Expect = 2e-15 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 19956 CAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATATT 20015 |||||||||||||| |||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 14023 CAAAGTTCTTTTCATCTTTCCCTCACGGTACTTGTTCGCTACCGGTCTCGCACTTATATT 13964 Query 20016 TAGCCTTA 20023 |||| ||| Sbjct 13963 TAGCTTTA 13956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334897356716510