Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2154 118 9e-22 seq378 107 2e-18 seq500 89.7 4e-13 >seq2154 Length=27549 Score = 118 bits (130), Expect = 9e-22 Identities = 140/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| ||||| |||||||||| || ||| | || Sbjct 4084 ATGCAGATTTTCGTCAAGACACTCACCGGGAAAACAATCACTCTTGAGGTCGAATCATCC 4143 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || |||||||||||||| || ||||| ||||| ||| Sbjct 4144 GACACGATCGATAATGTGAAGGCGAAGATTCAAGACAAGGAAGGAATTCCTCCCGACCAA 4203 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || ||||| || ||||| ||| || || | ||||||||| Sbjct 4204 CAGCGTTTGATTTTCGCAGGAAAACAATTGGAGGACGGCCGAACGCTCGCGGATTACAAC 4263 Query 22399 ATTCAAAAAG 22408 || ||||||| Sbjct 4264 ATCCAAAAAG 4273 >seq378 Length=86116 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || | || || ||||| | || | ||||||||| | | Sbjct 295 ATGCAAATTTTTGTTAAGACGCTGACTGGGAAAACTATTACGTTGGAAGTGGAATCTTCA 354 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || || || ||||| || || ||||| || || || Sbjct 355 GATACTATCGACAATGTGAAGGCGAAGATCCAGGACAAAGAAGGAATTCCTCCAGACCAG 414 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||| ||||| | || || ||||| | | ||||||||| Sbjct 415 CAACGTCTAATTTTTGCCGGTAAACAACTGGAAGACGGACGCACGCTTGCGGATTACAAC 474 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| ||||| || || Sbjct 475 ATTCAGAAAGAGTCTAC 491 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || || || ||||| | ||| | ||||| || | | Sbjct 67 ATGCAGATATTTGTGAAAACCTTGACTGGAAAAACTATAACTTTGGAAGTCGAGTCATCA 126 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || |||||||| || ||||| || ||||| Sbjct 127 GACACTATTGACAACGTGAAGGCGAAGATCCAGGACAAGGAAGGAATTCCTCCTGATCAG 186 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || ||||| ||||| |||| || || || | | ||||||||| Sbjct 187 CAACGTCTGATCTTCGCCGGTAAACAACTAGAAGACGGACGAACGCTTGCGGATTACAAC 246 Query 22399 ATTCAAAAAGAATCCAC 22415 || || |||||||| || Sbjct 247 ATCCAGAAAGAATCAAC 263 >seq500 Length=28399 Score = 89.7 bits (98), Expect = 4e-13 Identities = 244/367 (66%), Gaps = 14/367 (4%) Strand=Plus/Plus Query 128910 AATATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACC---AAT 128966 |||||||| ||||||||| ||| ||| | | || |||||||||||||| | ||| Sbjct 22648 AATATTAAGTGATTGACTCTGACAAATGTACGCTCCTCGATCGGCAGCCATGTCCAAAAT 22707 Query 128967 CAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTAT 129026 | |||| | || |||||||| || |||||||| ||| |||| || || || Sbjct 22708 CGCCTTTTGC---TTGATTTCCCAAACTGTTTTGTACTTTTCTTTCACATGAGGCGGAAT 22764 Query 129027 TTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTT 129086 ||| | || || || ||| ||| | | || | |||| ||| | | || | | Sbjct 22765 TTCAGCGATATTTTGTACGGAACCGC-GATCGCGAAGGATTTGATTCCGAAC-GTCTGAT 22822 Query 129087 GT--ACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCA 129144 || ||||||||| | || | || || | | |||||||| | | | ||| || Sbjct 22823 GTCCACAAATTCATCTCAATAAGCTCTTCCATGAGATATTTGTTGACAATTGTAAATTCT 22882 Query 129145 CCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTG 129204 || || | ||||| ||| | | |||||| ||||||||||| | || || ||| Sbjct 22883 CCAGCGAGGACGCGTCGATTGAACATGTTGGAAGTGAACGGCTCGATAGACTCGCAATTG 22942 Query 129205 CCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCA--CGCAAAGCGAGTTTCGCA 129262 || | ||||||||||||| ||||| ||||| ||| | ||||| |||||||| | Sbjct 22943 CCGAGAATTTGAGCCGTTGAGGCGGTTGGCATCGGAGCGAGCAGCAAA--GAGTTTCGGA 23000 Query 129263 AACCGTG 129269 ||||| Sbjct 23001 TTCCGTG 23007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419665540538650