Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Albugo_20candida_20[genbank_20GCA_5F000326065.1_202012-11-06] 12,210 sequences; 33,823,601 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2154 156 1e-32 seq378 156 1e-32 seq3863 109 1e-18 seq6259 87.8 4e-12 seq3650 86.0 1e-11 >seq2154 Length=27549 Score = 156 bits (172), Expect = 1e-32 Identities = 149/191 (78%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||||||||| || || || |||||||| || ||||| || ||||||||||||||||| | Sbjct 4273 CTTTTTGGATGTTGTAATCCGCGAGCGTTCGGCCGTCCTCCAATTGTTTTCCTGCGAAAA 4214 Query 288344 TCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTT 288403 ||| ||||||||| || |||||||| || || || || ||||| ||||| || | Sbjct 4213 TCAAACGCTGTTGGTCGGGAGGAATTCCTTCCTTGTCTTGAATCTTCGCCTTCACATTAT 4154 Query 288404 CTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 | || | ||| ||||| || || || ||||| || |||||||| || |||||||||| Sbjct 4153 CGATCGTGTCGGATGATTCGACCTCAAGAGTGATTGTTTTCCCGGTGAGTGTCTTGACGA 4094 Query 288464 ATATCTGCATT 288474 | ||||||||| Sbjct 4093 AAATCTGCATT 4083 >seq378 Length=86116 Score = 156 bits (172), Expect = 1e-32 Identities = 174/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | |||||| ||||||| ||| ||||| || || || || || || Sbjct 521 CCACCACGAAGACGAAGTACCAGATGAAGCGTAGACTCTTTCTGAATGTTGTAATCCGCA 462 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 ||||||||||||||||| | |||||| || || || || ||||| || || ||||| Sbjct 461 AGCGTGCGTCCGTCTTCCAGTTGTTTACCGGCAAAAATTAGACGTTGCTGG---TCTGGA 405 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||||||||| |||||||| ||||| ||||| || || |||| ||| ||||| Sbjct 404 GGAATTCCTTCTTTGTCCTGGATCTTCGCCTTCACATTGTCGATAGTATCTGAAGATTCC 345 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| | ||| || || ||||| ||||| ||||| || || || |||||| Sbjct 344 ACTTCCAACGTAATAGTTTTCCCAGTCAGCGTCTTAACAAAAATTTGCATT 294 Score = 147 bits (162), Expect = 5e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || | || | ||| |||||| ||||| || || || || Sbjct 294 TCCACCACGAAGACGTAGCACCAAGTGCAACGTTGATTCTTTCTGGATGTTGTAATCCGC 235 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||||| ||||||||||||| |||||| || |||||||||||||| || ||| | || Sbjct 234 AAGCGTTCGTCCGTCTTCTAGTTGTTTACCGGCGAAGATCAGACGTTGCTGATCAGGAGG 175 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 |||||||| || |||||||| ||||| |||||||| || |||| || || || || Sbjct 174 AATTCCTTCCTTGTCCTGGATCTTCGCCTTCACGTTGTCAATAGTGTCTGATGACTCGAC 115 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | || || || || || |||| || || || |||||||||||| Sbjct 114 TTCCAAAGTTATAGTTTTTCCAGTCAAGGTTTTCACAAATATCTGCATT 66 >seq3863 Length=215 Score = 109 bits (120), Expect = 1e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| |||||||||||||| || ||| | || |||||||| || |||||||| Sbjct 3 TTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCCTTGTCCTGGAT 62 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 ||||| |||||||| || |||| || || || ||||| | || || || ||||| Sbjct 63 CTTCGCCTTCACGTTGTCAATAGTGTCCGATGACTCGACTTCCAAAGTTATGGTTTTCCC 122 Query 288447 GGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| || || || |||||| Sbjct 123 AGTCAGCGTCTTAACAAAAATTTGCATT 150 >seq6259 Length=113 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || || || || || || ||||||||||||| ||||||||| ||||| Sbjct 93 TTCTTTCTGGATGTTGTAATCCGCAAGAGTACGTCCGTCTTCTAGTTGTTTTCCAGCGAA 34 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTC 288374 ||||||||| || ||| | || |||||||| Sbjct 33 GATCAGACGTTGCTGATCAGGAGGAATTCCTTC 1 >seq3650 Length=4340 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 288327 TTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGAT 288386 ||||||||| |||||||||||||| || ||| | || ||||||||||| || || || Sbjct 3 TTGTTTTCCAGCGAAGATCAGACGTTGCTGATCAGGAGGAATTCCTTCTTTGTCTTGAAT 62 Query 288387 TTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || || || || || || | || || || ||||| | ||||| ||||| || Sbjct 63 CTTGGCCTTTACATTATCGATCGTGTCTGAAGACTCAACTTCCAAAGTGATGGTCTTTCC 122 Query 288447 GGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || |||||||| Sbjct 123 AGTAAGCGTTTTCACAAAAATCTGCAT 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179469854128380